Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq108923 100 3e-16 >seq108923 Length=1180579 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || || || | || |||||||| || |||||||| ||| || |||| | Sbjct 1013521 CGCAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 1013462 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| || || || || ||| |||||| | |||||||| ||||| |||||||||||| Sbjct 1013461 TCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTG 1013402 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||||| || | | || | ||||| |||| || ||||| | || | Sbjct 1013401 TCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCTAGGGTGATG 1013342 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || ||||| ||||| ||||| || || || ||||| Sbjct 1013341 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 1013307 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || | |||||||| || || || | || |||||||| || |||||||| ||| | Sbjct 1013761 CCGCCCCTTAAACGCAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 1013702 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| | ||||| | || || || ||| |||||| | |||||||| ||||| Sbjct 1013701 AGGGTGCGCCCATCTTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAGGA 1013642 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| ||||| || | | || | ||||| |||| || || Sbjct 1013641 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 1013582 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | || ||||| ||||| ||||| || || || |||||| Sbjct 1013581 TCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATA 1013534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506126979033360