Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq10001 93.3 4e-14 seq78831 89.7 4e-13 >seq10001 Length=4979691 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || || || ||||| ||||| || || || ||||| | ||||| || || Sbjct 1096741 TCATCTCTGCTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCTTC 1096800 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||||| || | ||||| || || || || || |||||||| ||||||||||| ||| Sbjct 1096801 AACCAAAAGATGGATGCAAAGGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAAAGCT 1096860 Query 13295 A 13295 | Sbjct 1096861 A 1096861 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 ||| ||||||||||| | | || |||||||||||||| || |||||||| || || || Sbjct 1099785 AATGTAAGTATCTATGAGCAGACTGTACATTTCTGAATGTATGTTTTCCATAGCAATCTG 1099844 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | ||| |||| |||||| ||||| Sbjct 1099845 GAAGCCATAGAAACAGCGAGCTTCTGTTACCTGTACTTC 1099883 >seq78831 Length=713705 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||| || || ||||| || || ||||| || || ||||| || || | || || Sbjct 197040 TCATCTCGGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCTTC 196981 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGC 13293 | |||||||||||||||||| ||||| || || || || ||||| || || ||||| || Sbjct 196980 AGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACGGCAGCAAAGGC 196922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430246915470246