Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq108923 149 1e-30 seq57837 145 2e-29 seq10001 111 4e-19 seq74832 91.5 3e-13 seq27773 84.2 5e-11 >seq108923 Length=1180579 Score = 149 bits (164), Expect = 1e-30 Identities = 177/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || | || | || ||||||||||| || || ||||| Sbjct 1013536 ATACCACCTCTCAGGCGCAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCG 1013477 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || ||||| ||||| || | |||||| ||||| ||| Sbjct 1013476 GACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGA 1013417 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || || || || || || ||||| || | ||| || || || || Sbjct 1013416 GGAATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 1013357 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTACA 104569 || ||||| || || || || || || | ||||| ||||| ||||||||||| |||||| Sbjct 1013356 ACTTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATTTTCTGTACA 1013297 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || ||||| || || || | || ||||| | || ||||| Sbjct 1013731 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAACTGCTTTCCG 1013672 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||| ||||| ||||| || |||||||| || || || || || || Sbjct 1013671 GCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTG 1013612 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || || |||||||| || || || || || || | ||| Sbjct 1013611 ACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTTTGCCCGTCAAGGTT 1013552 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 1013551 TTCACAAAGATCTGCAT 1013535 >seq57837 Length=2024552 Score = 145 bits (160), Expect = 2e-29 Identities = 130/163 (80%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||| | | |||| |||||||| || ||| | || || || || |||||| Sbjct 1240379 GCTTTATGGTGGTACTTTGTCTCAAAAGGAATTGAGTACTTGGACACAATATTTTTCATC 1240320 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | ||||||||||| ||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 1240319 CTGAGGAAGAAATTTAACCAAATCAGTTTCCTTCATGTCTATCACCATTTCACTATGTTC 1240260 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || ||| | ||||| ||||| || ||| | |||||||||||| Sbjct 1240259 ACCTTGTGGTGGATTGGTATCAAGTGGGTTCCAGGAGGACAAG 1240217 >seq10001 Length=4979691 Score = 111 bits (122), Expect = 4e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| |||||||| || || ||||| || ||||| || || || ||||| Sbjct 1096874 GGAGAACGTGTAGTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTCTCTGGCTCCTTTGCA 1096815 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | ||||||||||||||||| ||||| | ||||| ||| | ||||| ||||||||| | Sbjct 1096814 TCCATCTTTTGGTTGAAGAAGAGAGGGTTAATGCCTGGACTCACTTTTTCTAACGAACTC 1096755 Query 269246 ATAAGCAGGGACGA 269259 || ||||| || || Sbjct 1096754 ATCAGCAGAGATGA 1096741 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 268910 TTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATA 268969 ||| | ||||| |||||| | | ||||| | ||||| || || |||||||| ||||| Sbjct 1099892 TTCAGCCAAGAAGTACAGGTAACAGAAGCTCGCTGTTTCTATGGCTTCCAGATTGCTATG 1099833 Query 268970 GAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 ||||| || |||||||| ||||||||||| | ||||||||||| || Sbjct 1099832 GAAAACATACATTCAGAAATGTACAGTCTGCTCATAGATACTTACAT 1099786 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 269495 GAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAG 269554 || ||||| ||| || ||||||||||| ||| | ||||| ||| |||| ||||| ||| Sbjct 1095140 GAGAATCCATTTGACTTCATGGAGAATATCTCACTGGAAGGCAAGACTAACTTCTTTGAG 1095081 Query 269555 AAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATTTTC 269614 ||||| ||| | | || ||||| ||||| |||||||| | ||| || |||| Sbjct 1095080 AAGCGAGTAGGAGAATACCAGAAGATGGGAGTAATGTCAAAACCCACAGATAACTCTTTC 1095021 Query 269615 ACTACAGATGCAGAATTCTAA 269635 ||| |||||||| || ||| Sbjct 1095020 ACTCTGGATGCAGACTTTTAA 1095000 >seq74832 Length=2191795 Score = 91.5 bits (100), Expect = 3e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||||||| | || |||| ||| |||| | | || ||||| ||||| | || | Sbjct 2178448 TGGTGGTATTATTTTTCCAAAGTAATTGAATTCATGGACACTATTTTCTTTGTACTGAGG 2178389 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTA 78608 |||||| | |||||||| ||| || ||||||||||||||| |||||||||| Sbjct 2178388 AAGAAAAACAGTCAAATTACTTTCCTTCATGTATATCATCATGCCACTATGTTTA 2178334 >seq27773 Length=9092468 Score = 84.2 bits (92), Expect = 5e-11 Identities = 178/266 (67%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 174074 AGTAAATATTCTAAACGAATTATACTACAATTAAGTATTGAATGTGAAACTTGTGGAACT 174133 ||| | ||||||| ||| ||||||||||| | || || || | ||||| |||||| | Sbjct 3645896 AGTGAGTATTCTACACGGATTATACTACAGTCCAGGATAGAGGGGGAAACAGGTGGAATT 3645955 Query 174134 TTCAGCTGTTTATTATTCCAAATTTCAATATTACCAGGAAGTAGTTGCTTTCCACGCGAT 174193 |||| |||||| |||||| | || | || |||| || || |||||| | Sbjct 3645956 TTCAACTGTTTGCCATTCCAGGTCTCCGTTTTCCCAGATGACAGGGACTCCCCACGCAAG 3646015 Query 174194 GAGGTAATAAGGTTTCTAACTTTCTTTATGTTTCTATCAGTATAAAATGTCTGTATTTGG 174253 || || ||| | | | |||| ||| || |||| | | ||| |||| |||| ||||| Sbjct 3646016 TTGGCAACAAGCTGTTTTACTTCCTTCATTTTTCCTTTGGCATAGAATGCCTGTGTTTGG 3646075 Query 174254 TAGATACAGACATTAGGCATTACTGCACGAGATGAATTATTTTCAATTTCTGCAACTATC 174313 || || | || |||| || ||| || || |||||||| || |||| ||| Sbjct 3646076 TAAATGGCTGCCTTTGGCACCACCATACGGGAAGAGCAGTTTTCAATCTCAGCAAAGATC 3646135 Query 174314 CTAACGTATTCACCAGGTACATAACC 174339 || ||||||| || ||| |||| Sbjct 3646136 TGAATTGATTCACCTGGAACAAAACC 3646161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149332739817284