Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18]
140,023 sequences; 2,208,410,377 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq108923 149 1e-30
seq57837 145 2e-29
seq10001 111 4e-19
seq74832 91.5 3e-13
seq27773 84.2 5e-11
>seq108923
Length=1180579
Score = 149 bits (164), Expect = 1e-30
Identities = 177/240 (74%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| || | || || | || | || ||||||||||| || || |||||
Sbjct 1013536 ATACCACCTCTCAGGCGCAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCG 1013477
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | || ||||| || || ||||| ||||| || | |||||| ||||| |||
Sbjct 1013476 GACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGA 1013417
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || |||||||| || || || || || || ||||| || | ||| || || || ||
Sbjct 1013416 GGAATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 1013357
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTACA 104569
|| ||||| || || || || || || | ||||| ||||| ||||||||||| ||||||
Sbjct 1013356 ACTTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATTTTCTGTACA 1013297
Score = 134 bits (148), Expect = 3e-26
Identities = 148/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||||||||| || || ||||| || || || | || ||||| | || |||||
Sbjct 1013731 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAACTGCTTTCCG 1013672
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | |||||| ||||| ||||| || |||||||| || || || || || ||
Sbjct 1013671 GCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTG 1013612
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| || || || || |||||||| || || || || || || | |||
Sbjct 1013611 ACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTTTGCCCGTCAAGGTT 1013552
Query 104543 TTTACAAATATCTGCAT 104559
|| ||||| ||||||||
Sbjct 1013551 TTCACAAAGATCTGCAT 1013535
>seq57837
Length=2024552
Score = 145 bits (160), Expect = 2e-29
Identities = 130/163 (80%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547
|| ||||||||||| | | |||| |||||||| || ||| | || || || || ||||||
Sbjct 1240379 GCTTTATGGTGGTACTTTGTCTCAAAAGGAATTGAGTACTTGGACACAATATTTTTCATC 1240320
Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607
|| | ||||||||||| ||||| ||||| || ||||| ||||| ||||| ||||||||
Sbjct 1240319 CTGAGGAAGAAATTTAACCAAATCAGTTTCCTTCATGTCTATCACCATTTCACTATGTTC 1240260
Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650
|| ||| | ||||| ||||| || ||| | ||||||||||||
Sbjct 1240259 ACCTTGTGGTGGATTGGTATCAAGTGGGTTCCAGGAGGACAAG 1240217
>seq10001
Length=4979691
Score = 111 bits (122), Expect = 4e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
|||||| | |||| |||||||| || || ||||| || ||||| || || || |||||
Sbjct 1096874 GGAGAACGTGTAGTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTCTCTGGCTCCTTTGCA 1096815
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
| ||||||||||||||||| ||||| | ||||| ||| | ||||| ||||||||| |
Sbjct 1096814 TCCATCTTTTGGTTGAAGAAGAGAGGGTTAATGCCTGGACTCACTTTTTCTAACGAACTC 1096755
Query 269246 ATAAGCAGGGACGA 269259
|| ||||| || ||
Sbjct 1096754 ATCAGCAGAGATGA 1096741
Score = 95.1 bits (104), Expect = 3e-14
Identities = 85/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 268910 TTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATA 268969
||| | ||||| |||||| | | ||||| | ||||| || || |||||||| |||||
Sbjct 1099892 TTCAGCCAAGAAGTACAGGTAACAGAAGCTCGCTGTTTCTATGGCTTCCAGATTGCTATG 1099833
Query 268970 GAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016
||||| || |||||||| ||||||||||| | ||||||||||| ||
Sbjct 1099832 GAAAACATACATTCAGAAATGTACAGTCTGCTCATAGATACTTACAT 1099786
Score = 84.2 bits (92), Expect = 5e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 269495 GAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAG 269554
|| ||||| ||| || ||||||||||| ||| | ||||| ||| |||| ||||| |||
Sbjct 1095140 GAGAATCCATTTGACTTCATGGAGAATATCTCACTGGAAGGCAAGACTAACTTCTTTGAG 1095081
Query 269555 AAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATTTTC 269614
||||| ||| | | || ||||| ||||| |||||||| | ||| || ||||
Sbjct 1095080 AAGCGAGTAGGAGAATACCAGAAGATGGGAGTAATGTCAAAACCCACAGATAACTCTTTC 1095021
Query 269615 ACTACAGATGCAGAATTCTAA 269635
||| |||||||| || |||
Sbjct 1095020 ACTCTGGATGCAGACTTTTAA 1095000
>seq74832
Length=2191795
Score = 91.5 bits (100), Expect = 3e-13
Identities = 89/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553
|||||||||||| | || |||| ||| |||| | | || ||||| ||||| | || |
Sbjct 2178448 TGGTGGTATTATTTTTCCAAAGTAATTGAATTCATGGACACTATTTTCTTTGTACTGAGG 2178389
Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTA 78608
|||||| | |||||||| ||| || ||||||||||||||| ||||||||||
Sbjct 2178388 AAGAAAAACAGTCAAATTACTTTCCTTCATGTATATCATCATGCCACTATGTTTA 2178334
>seq27773
Length=9092468
Score = 84.2 bits (92), Expect = 5e-11
Identities = 178/266 (67%), Gaps = 0/266 (0%)
Strand=Plus/Plus
Query 174074 AGTAAATATTCTAAACGAATTATACTACAATTAAGTATTGAATGTGAAACTTGTGGAACT 174133
||| | ||||||| ||| ||||||||||| | || || || | ||||| |||||| |
Sbjct 3645896 AGTGAGTATTCTACACGGATTATACTACAGTCCAGGATAGAGGGGGAAACAGGTGGAATT 3645955
Query 174134 TTCAGCTGTTTATTATTCCAAATTTCAATATTACCAGGAAGTAGTTGCTTTCCACGCGAT 174193
|||| |||||| |||||| | || | || |||| || || |||||| |
Sbjct 3645956 TTCAACTGTTTGCCATTCCAGGTCTCCGTTTTCCCAGATGACAGGGACTCCCCACGCAAG 3646015
Query 174194 GAGGTAATAAGGTTTCTAACTTTCTTTATGTTTCTATCAGTATAAAATGTCTGTATTTGG 174253
|| || ||| | | | |||| ||| || |||| | | ||| |||| |||| |||||
Sbjct 3646016 TTGGCAACAAGCTGTTTTACTTCCTTCATTTTTCCTTTGGCATAGAATGCCTGTGTTTGG 3646075
Query 174254 TAGATACAGACATTAGGCATTACTGCACGAGATGAATTATTTTCAATTTCTGCAACTATC 174313
|| || | || |||| || ||| || || |||||||| || |||| |||
Sbjct 3646076 TAAATGGCTGCCTTTGGCACCACCATACGGGAAGAGCAGTTTTCAATCTCAGCAAAGATC 3646135
Query 174314 CTAACGTATTCACCAGGTACATAACC 174339
|| ||||||| || ||| ||||
Sbjct 3646136 TGAATTGATTCACCTGGAACAAAACC 3646161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1149332739817284
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |