Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq62279 158 2e-33 seq48951 136 6e-27 >seq62279 Length=12999854 Score = 158 bits (174), Expect = 2e-33 Identities = 182/245 (74%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || ||||| | |||||| || || ||||| || || || ||||| ||||| |||||| Sbjct 4166493 TCACCGATGAGGATGAGGCGGGTTGTCTGGAAGAGCTGCTCGTCGCTCCACGTTGGATGC 4166552 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || | ||||| || ||||| |||| |||||| || | |||||||| || || |||||| Sbjct 4166553 TCCTGCTTCAGCACGTCGCAGACTCGGTTGTGCTCACGAAGCCAGATGGTCGCATACATC 4166612 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 ||||| || |||| |||||| || ||| || || |||||||| || | | || ||| Sbjct 4166613 ATGAGCCCCGGCAGCAGGCCGAACATCTCCTGGCCCACAGCCAGTTGCTTCTCTTTGGGA 4166672 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 ||||||| ||||||||||| ||| | |||| ||||| ||| |||||||| || Sbjct 4166673 GTGCCGGGAGGGTAGATCATGTGAACCGGAGCATCGAGGACCGTGGGTGGATACATCTCT 4166732 Query 9850 CCGTC 9854 || || Sbjct 4166733 CCATC 4166737 Score = 116 bits (128), Expect = 5e-21 Identities = 178/252 (71%), Gaps = 4/252 (2%) Strand=Plus/Plus Query 8691 ACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCC 8750 ||||||||| |||||||| ||| || || ||||| | || |||| |||||| Sbjct 4159604 ACGGACACCGCCTGACGTTGAGACACACGAGCTTCTGGAGCGAAGCTGTCTTCACGATCT 4159663 Query 8751 CAAACCCCACGTCT--CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGAC 8808 |||| || ||| |||||||| |||||||| |||||||| | || ||||||||| Sbjct 4159664 CAAAGCCA--GTCGAGCCGCCGAAAGTGCTGGGCTTCCAGTATTCTGGAGAGCAGATGGG 4159721 Query 8809 GTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAA 8868 ||| | | || ||||| ||||||||||| || || | ||| | || ||||| || || Sbjct 4159722 GTTTCCGAAAAGCCCTTTCAGGGAAAACGGGGCTCCAATCTCCACCATACTCTCCCCAAA 4159781 Query 8869 GATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGAT 8928 || | ||| || || || || | ||| || || | || ||||||| || | || Sbjct 4159782 AATAGAGTTTGGCTGGCATTTCTCAAGCAACAAACCAGGATAAAACTCCAAGGCATTAAT 4159841 Query 8929 GTCTCCGTAAAG 8940 ||||||||| || Sbjct 4159842 GTCTCCGTATAG 4159853 >seq48951 Length=15760405 Score = 136 bits (150), Expect = 6e-27 Identities = 222/317 (70%), Gaps = 2/317 (1%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| |||| | ||||| || || ||||| | |||| || || | | ||| Sbjct 14484639 GGAAGGCGGTGATGGGACAGCCCTTCACGTTATTGCAGATGAGCTTTTGTAGGGAGGCAG 14484580 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||| ||||| | ||| || |||||||| ||||||||||| |||| | Sbjct 14484579 TATTGATTATTTCAAAGCCCACTTTTCCACCAAAGGTGCTTGGTTTCCAGTACTCCGGAG 14484520 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 | ||||| | || |||| || ||||| | || || || || || || || | || Sbjct 14484519 AACAGATAGCATTTCCCATCAGCCCTTTCAAAGAGAATGGTGCTCCAAGTTCCACCATAG 14484460 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 ||||||| |||||||| | ||||| ||| |||| || | | || | |||| ||||| Sbjct 14484459 TCTCACCAAAGATGGCACTAGGACGAGGCCTTTCTACTAGAAGGCCAGGATACAGCTCCA 14484400 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-T 8977 ||| || || ||||| ||||| | | ||| || || ||||| ||||||||||| Sbjct 14484399 TAGCATCAATATCTCCATAAAGCTCTTCTAATTCAGCTGCCATTTCTTTTTCTCCTGTAA 14484340 Query 8978 TTATTAATAA-AAATAA 8993 | |||||||| |||||| Sbjct 14484339 TAATTAATAATAAATAA 14484323 Score = 113 bits (124), Expect = 6e-20 Identities = 170/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||| | || || || ||||| || || ||| |||||||||||| | | || ||| Sbjct 14481258 ATGAGCCTGGTAGTTTGGAACAGCTGCTCATCATCCCATTCTGGATGCACCTGCTTAAGA 14481199 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 ||||| || |||| ||||| ||||||||||| || || || |||||||| | ||| || Sbjct 14481198 ACATCACAGACTCGATTGTGCTCCCTGAGCCATATTGTGGCATACATCATTAAACCTGGG 14481139 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| ||||| |||| || || |||| | ||| | || || | | || || Sbjct 14481138 ACCAAACCAAACACCTCCTGGCCTACAGAAAATTGCAGGTGCTCAGGAATATGAGGTGGG 14481079 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | ||| || || || | ||| || |||||||| || ||||| ||| Sbjct 14481078 TAGATCATTTCTGCCTCAGTGTCCTTCACAGTGGGAGGGTACATTTCTCCATCAATCATC 14481019 Query 9862 TG 9863 || Sbjct 14481018 TG 14481017 Score = 102 bits (112), Expect = 1e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 10025 TGTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCT 10084 || |||||||||||| || || |||| |||||||| || |||| ||| ||| | Sbjct 14479783 TGATCTTACCCCATGGCCAAGAGCTTTGGTGAAGGCTGGCCCTCTGTGGTGATCTGTCTT 14479724 Query 10085 AAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGG 10144 ||| |||||||| ||||||||||| |||| || | ||||| | || ||||| || || Sbjct 14479723 AAAGAACTGGTGGGTGAAATGTTGAGCAAAGAACGTGAACATCATATTTGTGCCTTGAGG 14479664 Query 10145 ATCGGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAG 10204 ||| ||| | || | ||| || ||| ||| |||||||| ||| | ||| || || Sbjct 14479663 ATCAGGAATAAATTTTTTCCTCAGCAGAAATTTCTCCACAACTATTGCGGAATCTGGGAG 14479604 Query 10205 AttttttttACCTG 10218 | || ||||||| Sbjct 14479603 CTCCTTCTTACCTG 14479590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707284677899120