Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq108923 105 6e-18 seq51730 91.5 1e-13 seq51508 84.2 2e-11 >seq108923 Length=1180579 Score = 105 bits (116), Expect = 6e-18 Identities = 176/252 (70%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 26745 ATAAGTACT-TTTTAGTCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATC 26803 |||| | || |||| || | | |||||||| | ||||| ||||| || || || ||| | Sbjct 1013283 ATAACTTCTATTTTTGT-ACAGAAAATGCAGATCTTTGTGAAAACCTTGACGGGCAAAAC 1013341 Query 26804 GATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGA 26863 |||||| | ||| | || | | |||||||| ||| | ||||| || || || Sbjct 1013342 CATCACCCTAGAAGTGGAGCCCAGTGACACCATTGAGAATGTCAAGGCCAAAATCCAAGA 1013401 Query 26864 CAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGA 26923 ||||||||| || ||||| ||||| || || | || | | ||| || || || ||||| Sbjct 1013402 CAAAGAAGGCATTCCTCCAGATCAGCAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGA 1013461 Query 26924 TGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAG 26983 || | | | | |||||| ||||| || |||||||| || | || |||||||| | Sbjct 1013462 TGGGCGCACCCTGTCCGACTACAACATCCAGAAAGAATCCACCCTGCACTTGGTCCTGCG 1013521 Query 26984 ACTTAGAGGAGG 26995 || ||||| || Sbjct 1013522 CCTGAGAGGTGG 1013533 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| || || || ||| | |||||| | || | || | | Sbjct 1013535 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAGGTGGAGCCCAGT 1013594 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| || || ||||||||||| || ||||| ||||| Sbjct 1013595 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAG 1013654 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | | ||| || || | ||||||| | | | | |||||| ||| Sbjct 1013655 CAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGGCGCACCCTGTCCGACTACAAC 1013714 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 || || |||||||| || | || |||||||| Sbjct 1013715 ATCCAGAAAGAATCCACCCTGCACTTGGTCCTG 1013747 >seq51730 Length=3960093 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 71717 GAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACT 71776 ||||| || || ||||| | ||||||||||||||||||||| || || || |||||||| Sbjct 659107 GAGGGGAAGATGCACGGGTTCCTACGCATGTACTGGGCCAAGAAAATCCTGGAGTGGACC 659048 Query 71777 CAAACTCCCGAGCAGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGAC 71836 | | || ||| |||| || ||| | || || || |||||| | || || ||| Sbjct 659047 CGCTCCCCTGAGGAGGCCCTGAAGTTCGCCATCTACCTCAACGATCGCTATGAGCTGGAC 658988 Query 71837 GGTCGCGATCCTAACGGTTATGTCGGTT 71864 || || ||||| ||||| || || |||| Sbjct 658987 GGCCGGGATCCCAACGGCTACGTAGGTT 658960 >seq51508 Length=10579796 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| ||||| | ||||| || || || ||||| || | |||||| | || | || | Sbjct 7030473 CAACATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTAGAGGTTGAGCC 7030414 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 | ||||| || ||| | ||||| ||||| ||||||||||| || || || || Sbjct 7030413 CAGTGACACTATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATCCCACCTGA 7030354 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 || || || || || | | ||||| || || ||||||| | | | | ||||| Sbjct 7030353 CCAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTA 7030294 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || ||||| || ||||||| || ||| | || ||||| || Sbjct 7030293 CAACATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGG 7030243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477824603184560