Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq108923 113 4e-20 seq51508 96.9 3e-15 >seq108923 Length=1180579 Score = 113 bits (124), Expect = 4e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | ||||| ||||| || || || ||| | || ||| | ||||| ||| || Sbjct 1013304 AAAATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTGGAGCCC 1013363 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | |||||||| ||| | ||||| || || |||||||||||||| ||||| ||| Sbjct 1013364 AGTGACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGAT 1013423 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||||| |||| | | ||| ||||| || ||||||| | | | | ||| || Sbjct 1013424 CAGCAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTAC 1013483 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| || |||||||| || Sbjct 1013484 AACATCCAGAAAGAATCCAC 1013503 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || || || ||| | || ||| | || || ||| ||| Sbjct 1013535 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAGGTGGAGCCCAGT 1013594 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | ||||| || || |||||||||||||| ||||| ||||| Sbjct 1013595 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAG 1013654 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | | ||| ||||| | ||||||| | | | | ||| || ||| Sbjct 1013655 CAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGGCGCACCCTGTCCGACTACAAC 1013714 Query 24171 ATTCAAAAAGAATCTAC 24187 || || |||||||| || Sbjct 1013715 ATCCAGAAAGAATCCAC 1013731 >seq51508 Length=10579796 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | ||||| || || || ||||| || | || ||| | || || ||| | Sbjct 7030473 CAACATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTAGAGGTTGAGCC 7030414 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || ||||| || ||| | ||||| ||||| |||||||||||||| || || || Sbjct 7030413 CAGTGACACTATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATCCCACCTGA 7030354 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||||| ||||| | | |||||||| || ||||||| | | | | | || || Sbjct 7030353 CCAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTA 7030294 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || || ||||| || | ||| | ||| | | ||||||| || Sbjct 7030293 CAACATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGG 7030243 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || || | || ||| | || || ||| ||| Sbjct 7030241 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTTGAGCCCAGT 7030182 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || ||| | ||||| ||||| |||||||||||||| || || || || Sbjct 7030181 GACACTATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATCCCACCTGACCAG 7030122 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | |||||||| || ||||||| | | | | | || || ||| Sbjct 7030121 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 7030062 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || ||||| || | ||| | ||| | | ||||||| || Sbjct 7030061 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGG 7030015 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || || | || ||| | || || ||| ||| Sbjct 7030013 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTTGAGCCCAGT 7029954 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || ||| | ||||| ||||| |||||||||||||| || || || || Sbjct 7029953 GACACTATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATCCCACCTGACCAG 7029894 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | |||||||| || ||||||| | | | | | || || ||| Sbjct 7029893 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 7029834 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || || ||||| || | ||| | ||| Sbjct 7029833 ATCCAGAAGGAATCCACTCTCCATCTTGTG 7029804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429202301183565