Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq51508 116 2e-21 seq55172 114 9e-21 seq108923 107 1e-18 seq46854 104 2e-17 seq56505 100 2e-16 seq70054 98.7 7e-16 seq118474 96.9 2e-15 seq125916 95.1 8e-15 seq94156 95.1 8e-15 seq6669 93.3 3e-14 seq45954 91.5 1e-13 seq59503 87.8 1e-12 seq94488 86.0 4e-12 seq69388 86.0 4e-12 seq63503 86.0 4e-12 >seq51508 Length=10579796 Score = 116 bits (128), Expect = 2e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| ||||| ||| | ||| || ||| ||||| || || ||||| |||| Sbjct 7030241 TACCACCTCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 7030300 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| | || || | || || || ||||| || || | || || || | | Sbjct 7030301 ACAGGGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTG 7030360 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||||||||||| || || ||| ||||||| | ||| || | |||| Sbjct 7030361 GGATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAA 7030420 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | |||| || || || || || |||||||| ||||| || ||||||||||| Sbjct 7030421 CCTCTAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATGTT 7030472 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| ||||| ||| | ||| || ||| ||||| || || ||||| |||| Sbjct 7030013 TACCACCTCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 7030072 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| | || || | || || || ||||| || || | || || || | | Sbjct 7030073 ACAGGGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTG 7030132 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||||||||||| || || ||| ||||||| | ||| || | |||| Sbjct 7030133 GGATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAA 7030192 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | |||| || || || || || |||| ||| ||||| || |||||||| Sbjct 7030193 CCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 7030241 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| ||||| ||| | ||| |||||| ||||| || || ||||| |||||| Sbjct 7029787 CCACCCCTCAGACGCAGCACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 7029846 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| | || || | || || || ||||| || || | || || || | ||| Sbjct 7029847 AGGGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 7029906 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||||| || || ||| ||||||| | ||| || | ||||| Sbjct 7029907 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAACC 7029966 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || || || |||| ||| ||||| || |||||||| Sbjct 7029967 TCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 7030013 >seq55172 Length=1221010 Score = 114 bits (126), Expect = 9e-21 Identities = 81/93 (87%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||| | Sbjct 797666 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCAT 797607 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| ||||||||| | |||||||||||||| Sbjct 797606 TCATCCATTCATGCGCATTACTAATTAGATGAC 797574 >seq108923 Length=1180579 Score = 107 bits (118), Expect = 1e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| |||| ||||| || || ||| || || || || ||||| || | Sbjct 1013535 TACCACCTCTCAGGCGCAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGG 1013476 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || | || || | || ||||||||||| || | | || ||||| | | Sbjct 1013475 ACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAG 1013416 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||||||| ||||| ||| ||||||| | || || | || | Sbjct 1013415 GAATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCA 1013356 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||||| || || ||||| ||||||||||||||||| || |||||||| || Sbjct 1013355 CTTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATTTT 1013304 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 ||||| || || ||||||| ||||| || || ||| || || || || ||||| || Sbjct 1013764 TTACCGCCCCTTAAACGCAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCG 1013705 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 |||| || | || || || || ||||||||||| || | | || ||||| | Sbjct 1013704 GACAGGGTGCGCCCATCTTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGA 1013645 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 || | |||||||||||| ||||| ||| ||||||| | || || | || Sbjct 1013644 GGAATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 1013585 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || |||| || || ||||| ||||||||||||||||| || |||||||| Sbjct 1013584 ACCTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 1013535 >seq46854 Length=22154 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| || ||||||||| |||||||||||| Sbjct 7244 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACTGTACTTGTTGACTATCGGTCTCGT 7185 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 7184 GCCAGTATTTAGCCTTA 7168 >seq56505 Length=5790164 Score = 100 bits (110), Expect = 2e-16 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 19948 TCTCTCTTCAAA-GTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 4898790 TCTCTCTTCAAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 4898731 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 4898730 GCCAGTATTTAGCCTTA 4898714 >seq70054 Length=6717191 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | |||||||||| |||| ||||||| Sbjct 772902 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTTGACTATTGGTCTCGT 772843 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 772842 GCCAGTATTTAGCCTTA 772826 >seq118474 Length=300555 Score = 96.9 bits (106), Expect = 2e-15 Identities = 76/91 (84%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 25906 CCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAAT 25960 || |||||||||||||||||| ||||||| ||| ||||| || ||||||||| || Sbjct 149735 CCATTCCCTTGGCTGTGGTTTAGCTAGATTGTACGTAGGGACAGTGGGAATCTCGTTCAT 149794 Query 25961 CCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || ||||||| | |||||||||||||||||| Sbjct 149795 CCATTCATGCACATCACTAATTAGATGACGA 149825 >seq125916 Length=199037 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | |||| ||||| |||||||||||| Sbjct 88444 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTATTTGTTGACTATCGGTCTCGT 88385 Query 20007 GGTAATATTTAGCCTTA 20023 | | || ||||||||| Sbjct 88384 GCCAGTAATTAGCCTTA 88368 >seq94156 Length=1513417 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||| ||||||||||||||||||||||||||| | |||||||||| |||||||||||| Sbjct 100832 CTCTATCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTGTTGACTATCGGTCTCGT 100773 Query 20007 GGTAATATTTAGCCTTA 20023 | | || ||||||||| Sbjct 100772 GACAGTAATTAGCCTTA 100756 >seq6669 Length=12587025 Score = 93.3 bits (102), Expect = 3e-14 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCAC-GGTACTTGTTCGCTATCGGTCTCG 20005 |||||||||||||||||||||||||||||||| || |||||||||| ||||| |||| | Sbjct 1681565 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGGTACTTGTTGCCTATCAGTCTTG 1681506 Query 20006 CGGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 1681505 TGCCAGTATTTAGCCTTA 1681488 >seq45954 Length=4722808 Score = 91.5 bits (100), Expect = 1e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 19951 CTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTA 20010 ||||||||||||||||||||||||| || |||||||||||| |||||||||||| | | Sbjct 1293655 CTCTTCAAAGTTCTTTTCAACTTTCTCTTACGGTACTTGTTGACTATCGGTCTCGTGCCA 1293596 Query 20011 ATATTTAGCCTTA 20023 ||||||| |||| Sbjct 1293595 GTATTTAGTCTTA 1293583 >seq59503 Length=3821454 Score = 87.8 bits (96), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 3/77 (4%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||| |||||||||| ||||||||||||||| |||||||||| |||||||||||| Sbjct 3292584 CTCTCACTTCAAAGTTTTTTTCAACTTTCCCT---GGTACTTGTTGACTATCGGTCTCGT 3292640 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 3292641 GCCAGTATTTAGCCTTA 3292657 >seq94488 Length=2792697 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||| || ||||||||| |||| |||||| Sbjct 1468916 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCTGTACAGTACTTGTTGACTATTGGTCTCAT 1468857 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 1468856 GCCAGTATTTAGCCTTA 1468840 >seq69388 Length=2025887 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||| | |||||||||||||||||||||||| | |||||||||| |||| |||||| Sbjct 1049554 CTCTCACGTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTGTTGACTATTGGTCTCAT 1049495 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 1049494 GCCAGTATTTAGCCTTA 1049478 >seq63503 Length=1920607 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| ||||||||||| | |||||||||| ||||| |||| | Sbjct 820898 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTTATGGTACTTGTTGACTATCCGTCTTGT 820957 Query 20007 GGTAATATTTAGCCTTA 20023 | | ||||||||||| Sbjct 820958 GCCAGGATTTAGCCTTA 820974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334375602450113