Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq94266 96.9 4e-15 seq78831 96.9 4e-15 seq54353 91.5 2e-13 >seq94266 Length=584714 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| || ||||||||||| | || || || || || || || ||||| | Sbjct 98515 CACTGAACACTTTCTTGGTTTCTTTGTGCAAGTTGGAGACTGCGATCCTTGCTGCTAGGA 98574 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || || | || || || || ||| | || || ||||| || |||| Sbjct 98575 TGGCATAGTCGGGGTGCTTGGTGGTGAGGGTTGCAGCTGTCTCAGCAGCCAGTGTATCCA 98634 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || ||||| |||||| | |||| || ||||| |||||||| Sbjct 98635 GTTCCACTGTTGTGACACCACTGTATAGACCCTGGATCACCTTCAT 98680 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || ||| |||||||| ||||||||||||||||| || || | || || ||||||| || Sbjct 89245 CTCCACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCG 89304 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 || ||||| || || || ||||| || || || || ||| | | ||| || | ||||| Sbjct 89305 CTGCTCCTCCTTCCCGGTGTTCTTCTTCAGGTCAAGAAACTCAAAAATGTCCAAGTGCCA 89364 Query 63187 CGGTTCCAAGTATATGGC 63204 || |||| || ||||| Sbjct 89365 TGGCTCCAGATAGATGGC 89382 >seq78831 Length=713705 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||| ||||| | || ||||| || || ||||| ||||| || || | ||| | Sbjct 197042 CCTCATCTCGGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCT 196983 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||||||||| | ||||| || || || ||||| || ||||| || || ||||||| Sbjct 196982 TCAGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACGGCAGCAAAGG 196923 Query 32803 CAATAAGTCTCTCTCC 32818 ||| | |||||| || Sbjct 196922 CAACCACTCTCTCCCC 196907 Score = 82.4 bits (90), Expect = 1e-10 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 33158 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 33217 ||| ||||| ||||||| || || || | ||||||||||||||| ||||| || || | Sbjct 184871 CACCTCTTCTGCTGTCCAGAAGGAAGCTTGTGCCTTTTTATACATGTTCCATATATCCGG 184812 Query 33218 ATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTT 33257 ||||| | ||| || || ||||||||| ||||||||| Sbjct 184811 GTATTGGAGTGGGAAGATGACAAATCTACGAGGATTTTTT 184772 >seq54353 Length=924 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || ||| |||||||| ||||||||||||||||| || || | || || ||||||| || Sbjct 625 CTCCACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCG 684 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 || ||||| || || || ||||| || || || || ||| | | ||| || | ||||| Sbjct 685 CTGCTCCTCCTTCCCGGTGTTCTTCTTCAGGTCAAGAAACTCAAAAATGTCCAAGTGCCA 744 Query 63187 CGGTTCCAAGTATATGGC 63204 || |||| || ||||| Sbjct 745 TGGCTCCAGATAGATGGC 762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632522961830800