Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq108923 132 4e-26 seq51508 122 8e-23 >seq108923 Length=1180579 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || || ||||| || ||| ||||||| | ||||||||| | Sbjct 1013306 AATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTGGAGCCCAG 1013365 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| || ||| | ||| |||||| ||||||||||| ||||| || || || Sbjct 1013366 TGACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCA 1013425 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || |||||||| || || | ||||||| ||||| || ||| ||||| Sbjct 1013426 GCAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 1013485 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||||||||| || || || || || | || ||||| || Sbjct 1013486 CATCCAGAAAGAATCCACCCTGCACTTGGTCCTGCGCCTGAGAGGTGG 1013533 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || ||||| || ||| ||||||| | || |||||| | | Sbjct 1013535 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAGGTGGAGCCCAGT 1013594 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| |||||| ||||||||||| ||||| || || || Sbjct 1013595 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAG 1013654 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||| || || || ||||||| ||||| || ||| ||||| Sbjct 1013655 CAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGGCGCACCCTGTCCGACTACAAC 1013714 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAA 25228 || || ||||||||||| || || || || || | |||| || || || Sbjct 1013715 ATCCAGAAAGAATCCACCCTGCACTTGGTCCTGCGTTTAAGGGGCGGTAA 1013764 >seq51508 Length=10579796 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||||| || ||||||| | || || ||| | | Sbjct 7030241 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTTGAGCCCAGT 7030182 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| ||| | ||| || ||| ||||||||||| || ||||||||||| Sbjct 7030181 GACACTATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATCCCACCTGACCAG 7030122 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| ||||| || | ||||||| || || || || ||||| Sbjct 7030121 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 7030062 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || |||||||| || ||| | ||||| | || ||||| || Sbjct 7030061 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGG 7030015 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || ||||||| | || || ||| | | Sbjct 7030469 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTAGAGGTTGAGCCCAGT 7030410 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| ||| | ||| || ||| ||||||||||| || ||||||||||| Sbjct 7030409 GACACTATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATCCCACCTGACCAG 7030350 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| ||||| || | ||||||| || || || || ||||| Sbjct 7030349 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 7030290 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || |||||||| || ||| | ||||| | || ||||| || Sbjct 7030289 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGG 7030243 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||||| || ||||||| | || || ||| | | Sbjct 7030013 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTTGAGCCCAGT 7029954 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| ||| | ||| || ||| ||||||||||| || ||||||||||| Sbjct 7029953 GACACTATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATCCCACCTGACCAG 7029894 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| ||||| || | ||||||| || || || || ||||| Sbjct 7029893 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 7029834 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || |||||||| || ||| | ||||| Sbjct 7029833 ATCCAGAAGGAATCCACTCTCCATCTTGTGCT 7029802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432588512632745