Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq108923 100 2e-16 seq51508 82.4 6e-11 >seq108923 Length=1180579 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 |||||||| || ||||| ||||| |||| ||||||||||| ||| | ||| ||| ||| Sbjct 1013304 AAAATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTGGAGCCC 1013363 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 || || | ||| | || || ||||| |||||||||||| |||| ||| Sbjct 1013364 AGTGACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGAT 1013423 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 || || ||| | || | ||| || || || |||||||| || || |||| || Sbjct 1013424 CAGCAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTAC 1013483 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || |||||||| || || || || || |||| ||| | ||||| Sbjct 1013484 AACATCCAGAAAGAATCCACCCTGCACTTGGTCCTGCGCCTGAGAGGTGG 1013533 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| ||||| |||| ||||||||||| ||| | || ||| ||||| Sbjct 1013535 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAGGTGGAGCCCAGT 1013594 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || || ||||| |||||||||||| |||| ||||| Sbjct 1013595 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAG 1013654 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||| | || | ||| || || || ||||||||| || || |||| || || Sbjct 1013655 CAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGGCGCACCCTGTCCGACTACAAC 1013714 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGT 111402 || || |||||||| || || || || || ||||| Sbjct 1013715 ATCCAGAAAGAATCCACCCTGCACTTGGTCCTGCGT 1013750 >seq51508 Length=10579796 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| || || |||||||||| ||||| ||| | || || ||||| Sbjct 7030013 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTTGAGCCCAGT 7029954 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || || ||| | || || || || |||||||||||| | || || || Sbjct 7029953 GACACTATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATCCCACCTGACCAG 7029894 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||||| || | ||| ||||| || |||||||| || || | || || || Sbjct 7029893 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 7029834 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111414 || || || ||||| || || ||| | ||| |||||||| | |||||| Sbjct 7029833 ATCCAGAAGGAATCCACTCTCCATCTTGTGCTGCGTCTGAGGGGTGGC 7029786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422318069416600