Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq108923 134 1e-26 >seq108923 Length=1180579 Score = 134 bits (148), Expect = 1e-26 Identities = 174/240 (73%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 22210 TTTGTAAAGA---TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAA 22266 |||||| ||| |||| || ||||| ||||| || || || ||||| |||| || ||| Sbjct 1013295 TTTGTACAGAAAATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAA 1013354 Query 22267 GTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATT 22326 ||||| ||| || ||| | || || |||| ||||| |||||||| || || ||| Sbjct 1013355 GTGGAGCCCAGTGACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATT 1013414 Query 22327 CCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTC 22386 || || ||||| || | | || |||||||| || ||| | || ||| |||||| | Sbjct 1013415 CCTCCAGATCAGCAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTG 1013474 Query 22387 TCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| |||||||| || |||||||||||| | || || || |||| || | || ||| Sbjct 1013475 TCCGACTACAACATCCAGAAAGAATCCACCCTGCACTTGGTCCTGCGCCTGAGAGGTGGT 1013534 Score = 132 bits (146), Expect = 4e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| || || || ||||| |||| || || ||||| ||| Sbjct 1013535 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAGGTGGAGCCCAGT 1013594 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||||| |||||||| || || ||||| || ||||| Sbjct 1013595 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAG 1013654 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| || ||||| || ||| |||||| | ||||| |||||| Sbjct 1013655 CAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGGCGCACCCTGTCCGACTACAAC 1013714 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 || || |||||||||||| | || || || |||| || Sbjct 1013715 ATCCAGAAAGAATCCACCCTGCACTTGGTCCTGCGTTT 1013752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419011721444995