Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq108923 174 3e-38 seq133358 102 1e-16 seq115918 84.2 4e-11 >seq108923 Length=1180579 Score = 174 bits (192), Expect = 3e-38 Identities = 170/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||||||| || ||||| ||||| |||||||| || ||||| || || | | Sbjct 1013524 AGGCGCAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGC 1013465 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| ||||| || || | || || || || || ||||||||||| Sbjct 1013464 CCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCT 1013405 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| || || |||||||| ||| |||||||| | || ||||| | |||| Sbjct 1013404 TTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCTAGGGTG 1013345 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||||| ||||| | ||| || || || ||||||||| Sbjct 1013344 ATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATT 1013306 Score = 167 bits (184), Expect = 4e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 |||| |||||||| || ||||| ||||| |||||||| || ||||| || || | |||| Sbjct 1013749 CGCAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 1013690 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| |||||||| ||||| || || | || || || || || ||||||||||| ||| Sbjct 1013689 TCTTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTG 1013630 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 ||||| || || |||||||| ||| |||||||| | || || || | ||||||| Sbjct 1013629 TCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATG 1013570 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| | ||| || || || |||||||| Sbjct 1013569 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 1013535 >seq133358 Length=9325166 Score = 102 bits (112), Expect = 1e-16 Identities = 87/105 (83%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTC 68416 || |||||||| || ||||| |||||||| |||||||||||| |||| || || || Sbjct 1855520 CCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC-GCTGGGCTCCACCTC 1855462 Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||||||| ||||| ||||| || ||||| |||||||| Sbjct 1855461 CAAGGTGATGGTTTTGCCCGTCAGGGTTTTCACGAAGATCTGCAT 1855417 >seq115918 Length=639774 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 84452 GAGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 84511 |||||||||| |||||||||||| ||||| || ||||||| || |||||||||||| Sbjct 264938 GAGCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 264879 Query 84512 GAGCCCCACATCGGGC 84527 ||||||||| | |||| Sbjct 264878 GAGCCCCACGTTGGGC 264863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920009295833560