Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq10001 107 4e-18 seq94266 105 1e-17 seq54353 105 1e-17 seq78831 87.8 3e-12 >seq10001 Length=4979691 Score = 107 bits (118), Expect = 4e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||| ||| | || || || || ||||||||||| ||| |||| || |||||||| ||| Sbjct 1096862 GTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTCTCTGGCTCCTTTGCATCCATCTTTTGG 1096803 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 | ||| ||| | || ||||| |||||||| || || ||||||||||||||||| || Sbjct 1096802 TTGAAGAAGAGAGGGTTAATGCCTGGACTCACTTTTTCTAACGAACTCATCAGCAGAGAT 1096743 Query 42828 GAGG 42831 |||| Sbjct 1096742 GAGG 1096739 >seq94266 Length=584714 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 |||| | ||||||||| || || ||||||||||| ||||||||| |||| | |||| Sbjct 89249 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGC 89308 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| || ||||||||| |||| || | ||| ||||| | ||| | |||||| ||| Sbjct 89309 TCCTCCTTCCCGGTGTTCTTCTTCAGGTCAAGAAACTCAAAAATGTCCAAGTGCCATGGC 89368 Query 245123 TCCATGTAGACAGCGAGGGCGCCGGG 245148 |||| |||| || | ||| ||||| Sbjct 89369 TCCAGATAGATGGCAAAGGCCCCGGG 89394 Score = 98.7 bits (108), Expect = 2e-15 Identities = 132/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||| || | |||| |||| || || || ||||| ||||| ||||||||||||| Sbjct 87685 CCACCTCGTCTTTGCTGGTATACTCCACGATTTCTGTGCACAGGTTGCTGCACTTGATGG 87744 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 | ||||||| ||| || ||| ||| || || | ||||||||| |||||| | || Sbjct 87745 TTCCCAGGTTCTGCTGGTTGCTCTTCCTATTACAAGAGTCCTTGTACAGCATGTAAGGGG 87804 Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC 244883 |||||||||| ||| | | | || | || |||||| | | |||||| ||| | Sbjct 87805 TCCCGGTCTCGGTCTGAGACTCTATGATGGCGTACCAGAGCTGCTGAGCCTTCACCACCT 87864 Query 244884 TGCG 244887 |||| Sbjct 87865 TGCG 87868 >seq54353 Length=924 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 |||| | ||||||||| || || ||||||||||| ||||||||| |||| | |||| Sbjct 629 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGC 688 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| || ||||||||| |||| || | ||| ||||| | ||| | |||||| ||| Sbjct 689 TCCTCCTTCCCGGTGTTCTTCTTCAGGTCAAGAAACTCAAAAATGTCCAAGTGCCATGGC 748 Query 245123 TCCATGTAGACAGCGAGGGCGCCGGG 245148 |||| |||| || | ||| ||||| Sbjct 749 TCCAGATAGATGGCAAAGGCCCCGGG 774 >seq78831 Length=713705 Score = 87.8 bits (96), Expect = 3e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | ||||| || || ||||||||||| || | || || Sbjct 196907 GGGGAGAGAGTGGTTGCCTTTGCTGCCGTGGAAGGGATCTTCTTCTCAGGTTCTTTTGCT 196966 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACT 42814 | || || ||||| ||| || ||| ||| |||||| ||||| || ||||| || || || Sbjct 196967 GCTATATTTTGGCTGAAGAAG-AGGGGTCTGATGCCTGGACTGACATTCTCCAATGAGCT 197025 Query 42815 CATCAGCAGGGACGAGG 42831 ||| ||| | || |||| Sbjct 197026 CATTAGCCGAGATGAGG 197042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 942686334902480