Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq48951 136 6e-27 seq62279 86.0 9e-12 >seq48951 Length=15760405 Score = 136 bits (150), Expect = 6e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 || ||||| |||| |||||| ||| ||||||| || || | || || |||||||| ||| Sbjct 14481249 GTAGTTTGGAACAGCTGCTCATCATCCCATTCTGGATGCACCTGCTTAAGAACATCACAG 14481190 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 || | ||||| || || |||||||| ||||| |||||||||||||| || || |||||| Sbjct 14481189 ACTCGATTGTGCTCCCTGAGCCATATTGTGGCATACATCATTAAACCTGGGACCAAACCA 14481130 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915 ||||| || | || || | ||| |||| | || || | | || | || | ||| Sbjct 14481129 AACACCTCCTGGCCTACAGAAAATTGCAGGTGCTCAGGAATATGAGGTGGGTAGATCATT 14481070 Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 | ||| || || || || ||||| || |||||||| || ||||| | ||| Sbjct 14481069 TCTGCCTCAGTGTCCTTCACAGTGGGAGGGTACATTTCTCCATCAATCATCTG 14481017 Score = 129 bits (142), Expect = 8e-25 Identities = 206/296 (70%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| |||| | ||||| |||||||| || || ||||| || | || || | Sbjct 14484639 GGAAGGCGGTGATGGGACAGCCCTTCACGTTATTGCAGATGAGCTTTTGTAGGGAGGCAG 14484580 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || || |||||||| |||||||||||| |||| | Sbjct 14484579 TATTGATTATTTCAAAGCCCACTTTTCCACCAAAGGTGCTTGGTTTCCAGTACTCCGGAG 14484520 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 | ||||| | || |||| ||||||||||| || || || || || || || | || Sbjct 14484519 AACAGATAGCATTTCCCATCAGCCCTTTCAAAGAGAATGGTGCTCCAAGTTCCACCATAG 14484460 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 ||||||| |||||||||| ||||| || |||| || | | ||||| || || || | Sbjct 14484459 TCTCACCAAAGATGGCACTAGGACGAGGCCTTTCTACTAGAAGGCCAGGATACAGCTCCA 14484400 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | || ||||| || |||| || || || || || || || || ||| Sbjct 14484399 TAGCATCAATATCTCCATAAAGCTCTTCTAATTCAGCTGCCATTTCTTTTTCTCCT 14484344 >seq62279 Length=12999854 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 || |||| ||| | |||||| ||||||| |||||||| | || || ||||||||| Sbjct 4164060 TCCGGCATCAGCGCGTGCCAGTGGTAGAGCTGGTTGAACTCCACGGCAATCCGGTTCTGG 4164119 Query 9613 TACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCG 9672 ||||| || | || ||||| | |||||||||||| | || || | | ||||||| Sbjct 4164120 TACTGGAACTGCATGCCAAACAGCAGCTCCGGGTCAAACTTCAGGTGCAGGAAGTACCCG 4164179 Query 9673 CTGAGTTGCTGGACATA 9689 ||||| ||||| || || Sbjct 4164180 CTGAGATGCTGCACGTA 4164196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722461267928200