Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq89715 123 2e-22 >seq89715 Length=6364972 Score = 123 bits (136), Expect = 2e-22 Identities = 361/549 (66%), Gaps = 8/549 (1%) Strand=Plus/Plus Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 |||||||| || ||||||||||||||||| | | | || || | ||| |||||||| Sbjct 2943607 GCACCATAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAG 2943666 Query 517670 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 |||| || |||| ||| | ||| || || || | || || ||||| | |||||| Sbjct 2943667 AAATCCTGCAGCAGTT-TCTGAATCTTGGGGATTCGGGTGGACCCACCAACCAGTACAAT 2943725 Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788 ||||| | ||||||||| || ||||| | |||| | | || || || || || || Sbjct 2943726 ATCATGGATCTGTGATTTGTCTAGTTTGGCATCCCGCAGGGCCTTCTCCACAGGATCCAG 2943785 Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 517848 | | | |||| || | | | ||||| || |||||| |||| | | | Sbjct 2943786 AGTGCCACGGAACAGATCAGCATTTAACTCTTCAAAACGAGCTCTGGTAATTGAGGTGTA 2943845 Query 517849 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 517908 | ||||||| || || | | ||| |||| ||||| | | ||||| ||| || || Sbjct 2943846 AAAATCAATGCCCTCATAGAGAGAGTCAATCTCAATACTGGCCTGAGTGCTAGAGGAGAG 2943905 Query 517909 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGAT-TGAT 517967 | ||| || ||||||||||| ||||| | || | || | || | | || | | | Sbjct 2943906 GGTACGCTTTGCACGTTCACAAGCTGTGCGGAGACGGCGAACTGC-TCTCTTGTTCTCAG 2943964 Query 517968 TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATT 518025 | | ||| | || | || | |||||| || | | | ||| | || | ||| || Sbjct 2943965 TAATATCCTTCTTGTGCTTCCGCTTGAATTCAGCGATGAA--ATGGTTGACCATACGGTT 2944022 Query 518026 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 518085 |||||| || || || ||||| | |||| |||| || | |||||| || | || Sbjct 2944023 ATCAAAGTCCTCCCCACCCAAGTGGGTATCACCTGCAGTTGACTTTACTTCAAAGATGCC 2944082 Query 518086 ATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 518145 ||| |||| || | | | |||||| || |||||||| | ||||| ||||| || Sbjct 2944083 ATCCTCAATAGTGAGGATTGAAACATCAAAAGTGCCACCACCAAGGTCAAAGATAAGGAC 2944142 Query 518146 ATTCATTTC 518154 |||| |||| Sbjct 2944143 ATTCCTTTC 2944151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3773873997504238