Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq95599 190 3e-43 seq89715 176 6e-39 seq76165 116 5e-21 seq77165 82.4 1e-10 >seq95599 Length=5331149 Score = 190 bits (210), Expect = 3e-43 Identities = 781/1217 (64%), Gaps = 26/1217 (2%) Strand=Plus/Plus Query 6944 GTTTCGA-GTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTC 7002 || |||| | ||||| |||||||| || || || | || | || ||| || || || Sbjct 3767290 GTCTCGATGCCCAAG-GACAGAGGCGTGACATCGAGCAGCAGCAAGTCCTGCACGTTCTC 3767348 Query 7003 GTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATC 7062 | || ||| | | |||||| || || || | || || || || || ||||| || Sbjct 3767349 AGACTTGTCCCCCATGAGGATGGCAGCCTGCACTGCGGCGCCATAAGCTACAGCCTCGTC 3767408 Query 7063 GGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAAT 7122 |||||| || | || || || || || ||||| ||| | ||| || | | ||| || Sbjct 3767409 GGGGTTGATGCTCTTGTTGAGCTCCTTGCCGTTGAAAAAGTCCTGCAAGAGCTTTTGGAT 3767468 Query 7123 TTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGAT 7182 || ||||| || || || || || |||| ||||| || | | | || || | Sbjct 3767469 CTTGGGGATGCGGGTGGAGCCGCCCACCAGCACGATCTCCTGGATCTGACCCTTGTCTAG 3767528 Query 7183 CTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACA 7242 ||| | || || || | || || || || |||| ||||| | ||| Sbjct 3767529 CTTGGCATCGCGCAGGGCCTTCTCCACGGGCTCCAAGGTGCCGCGGAAGAGGTCGGCGTT 3767588 Query 7243 CAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGA 7302 || ||||| || || || ||||| ||||| || ||||| || | ||| ||| | | ||| Sbjct 3767589 GAGCTCCTCGAAGCGGGCGCGGGTGATGGAAGTGTAGAAGTCGATGCCCTCGAACAGCGA 3767648 Query 7303 ATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGC 7362 || || || ||| | | || | | || | ||| ||||| || ||||| || || Sbjct 3767649 GTCGATCTCGATGCTAGCCTGGGTGGAGGAGCTCAGCGTGCGCTTGGCCCGCTCGCAGGC 3767708 Query 7363 CGTTCGTAAACGACGAAGGGCACGCGGGTT---ACCGGAAATATCTTTCTTATGTTTACG 7419 || || | || || | || ||| ||| |||| || || ||| || || || Sbjct 3767709 AGTGCGCAGCCGCCGCACAGCCCGCTTGTTGCTACCG---ATGTCCCGCTTGTGCTTGCG 3767765 Query 7420 TTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTG 7479 || ||||| || |||||| | | | || || || || || || | ||| Sbjct 3767766 CTTGAACTCCTCCACGAAGTGGTTCACCATGCGGTTGTCAAAGTCCTCGCCGCCGAGGTG 3767825 Query 7480 TGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAAC 7539 || ||||| || || | || || || ||||| || | || ||| | | | || || Sbjct 3767826 GGTGTCCCCGGCCGTGGACTTCACCTCGAAGATGCCGTCCTCGATGGTGAGGATGGAGAC 3767885 Query 7540 ATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTT---TG-- 7594 ||| || || || || |||| ||| || || || |||||| | ||| || | || Sbjct 3767886 ATCGAAGGTGCCGCCGCCCAAGTCGAAGATAAGCACGTTCTTCTCGCCGGCCCCAGTGCC 3767945 Query 7595 -TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACA 7653 ||||| || || || || || || || | | ||| | || || || ||||| || Sbjct 3767946 TTTCTTGTCCAGCCCATAGGCTATGGCTGGGGGCGT--GCTCGTTGATGATACGCAGCAC 3768003 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 ||| ||||| | || || | || ||||| || || || || || || ||||| ||||| Sbjct 3768004 GTTGAGGCCGGTGATGGTACCAGCGTCTTTGGTGGCCTGGCGCTGGGAGTCGTTGAAGTA 3768063 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 ||| || || || | ||| |||| | || || || || || | |||||||| || Sbjct 3768064 GGCGGGCACGGTGATGACGGCGTTCTGCACCTTGCGGCCCAGGTAGGCCTCCGCGATCTC 3768123 Query 7774 TTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTT-TCAC 7832 ||||| ||||| || ||||| || ||||| || | | | | || | ||| || | Sbjct 3768124 CTTCATCTTGGTGAGCACCATGGAGCTGATCTCCTCGGG-GAAGAAGGTCTTGTTCTCGC 3768182 Query 7833 CGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACC 7892 | || | || || | | | |||| || |||| | || | || | | || Sbjct 3768183 CCTTGTACTCCACCTGCACCTTGGGCTTG-CCGC--CCTCGCTCACTACGCGGAAGGGCC 3768239 Query 7893 AATCTTTCATATCGTCTTGGACCTGTTG-GTCCGAAAACTTTCTTCCGATAAGACGCTTT 7951 | | |||||| ||| || ||| || | ||| |||||| ||||| || ||||| Sbjct 3768240 AGTGTTTCATGTCGGACTGCACC-GTGGTGTCTTCGTACTTTCGGCCGATGAGGCGCTTG 3768298 Query 7952 GCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATA 8011 || || || | ||||| ||||||||||||| |||||||| || || |||||||| Sbjct 3768299 GCGTCGAAGATGGTGTTGGTGGGGTTCATGGCAACCTGGTTCTTGGCGGCATCCCCGATG 3768358 Query 8012 AGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCG 8071 || || || | || || || || ||||| || || || || || || |||||| Sbjct 3768359 AGGCGCTC---GGTGTCGGTGAAGGCCACGTAGCTAGGCGTGGTGCGGTTGCCCTGGTCG 3768415 Query 8072 TTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCT 8131 || || || || ||||| | ||| ||| |||| || ||||| || ||||| || || Sbjct 3768416 TTGGCGATGATCTCTACCTTGCCGTGTTGAAAGACACCCACGCAGGAGTACGTGGTGCCC 3768475 Query 8132 AAATCAATACCGATTGC 8148 | ||| || || || || Sbjct 3768476 AGATCGATGCCAATGGC 3768492 >seq89715 Length=6364972 Score = 176 bits (194), Expect = 6e-39 Identities = 363/540 (67%), Gaps = 0/540 (0%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || ||||| || || || | || ||||| ||||| || || || Sbjct 2943607 GCACCATAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAG 2943666 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | || || ||||| || |||||||| || || ||||| |||| || || Sbjct 2943667 AAATCCTGCAGCAGTTTCTGAATCTTGGGGATTCGGGTGGACCCACCAACCAGTACAATA 2943726 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | ||||| || | || | || || || | || || ||||| |||| | Sbjct 2943727 TCATGGATCTGTGATTTGTCTAGTTTGGCATCCCGCAGGGCCTTCTCCACAGGATCCAGA 2943786 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||||| || | | || |||||||| || | |||||| || || || Sbjct 2943787 GTGCCACGGAACAGATCAGCATTTAACTCTTCAAAACGAGCTCTGGTAATTGAGGTGTAA 2943846 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 ||||||| ||| || || | || ||||| ||||| | | || | | || || | Sbjct 2943847 AAATCAATGCCCTCATAGAGAGAGTCAATCTCAATACTGGCCTGAGTGCTAGAGGAGAGG 2943906 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| || ||||| || || || | ||| |||| || | | ||| | | | Sbjct 2943907 GTACGCTTTGCACGTTCACAAGCTGTGCGGAGACGGCGAACTGCTCTCTTGTTCTCAGTA 2943966 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 ||||| ||||| || || || || || || | ||| || | | | ||| Sbjct 2943967 ATATCCTTCTTGTGCTTCCGCTTGAATTCAGCGATGAAATGGTTGACCATACGGTTATCA 2944026 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || || ||||||||||| ||||| || || || | || ||||||||||| || | Sbjct 2944027 AAGTCCTCCCCACCCAAGTGGGTATCACCTGCAGTTGACTTTACTTCAAAGATGCCATCC 2944086 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 ||||| | | | ||||||||||| || |||||||| |||||||| || || || ||| Sbjct 2944087 TCAATAGTGAGGATTGAAACATCAAAAGTGCCACCACCAAGGTCAAAGATAAGGACATTC 2944146 >seq76165 Length=3777511 Score = 116 bits (128), Expect = 5e-21 Identities = 442/685 (65%), Gaps = 18/685 (3%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| || || |||| ||| || |||||||| || || || ||||| ||||| || Sbjct 637765 TCGAAATCCTCCCCGCCCAGGTGGGTGTCCCCCGCAGTGGCCTTCACTTCGAAGATGCCA 637824 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || | | | | || || ||||| || || || ||||||||||| ||||| | | Sbjct 637825 TCGTCCACCCTGAGGATGGACACGTCAAAGGTGCCGCCGCCCAGGTCAAAGATGAGGATG 637884 Query 7577 TT------CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630 || | || |||| | | || || ||||| || || ||||| ||||| Sbjct 637885 TTGCGCTTCCCTTCCCCGTCGCGGCTGGCCTCCAGGCCGTAGGCAATGGCCGCTGCCGTG 637944 Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690 || || || | || || || |||||||| || || | |||||| | || ||| Sbjct 637945 GGCTCGTTGAGGATCTTCAGGACGTGGAGGCCAGCGATCGTCCCAGCATCTATGGTGGCT 638004 Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750 | || || || ||||| || ||||| || || || | ||| || | |||| Sbjct 638005 CGGCGCTGGGAGTCGTTGAAATAGGCTGGCACTGTGATGACAGCCTGGGTGATGGGGCAG 638064 Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCA 7810 || || || | || || | | ||||| |||| || || || | || ||||| ||| Sbjct 638065 CCTAGGTAGGCCTCAGCCGTCTGCTTCATCTTGGCGAGGACTATGGCAGAGATCTCCTCA 638124 Query 7811 GCCGCAAACTGTTTCGT--TTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAG 7868 | | | | || | | ||| || | || || || || | || | || ||| | Sbjct 638125 GG-GTAGAAGGTCTTCTCCTTCCCCTTGAAGGACACCTGCAC-CTTGAGCTTC-CCG--G 638179 Query 7869 CACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAA 7928 | || | |||| | | | ||| | |||| || || ||| |||||| || Sbjct 638180 TATCGCTCACCACCTGAAAGGGCCAGTGCCTCATGTCCAGCTGAACCATGTGGTCCTCAA 638239 Query 7929 ACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTT 7988 | | | ||||| || ||||| |||||||| || ||||| | |||||| | ||| | | Sbjct 638240 CCATCCGGCCGATCAGCCGCTTGGCATCAAAGACGGTGTTCTGGGGGTTGAGGGCCGCCT 638299 Query 7989 GGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATG 8048 || |||| || | |||||| | || || || | | | || || || ||||| | || Sbjct 638300 GGCTCTTGGCTGGGTCCCCCACCAGGCGCTCCGTGT---CAGTGAAAGCCACGTA-GCTG 638355 Query 8049 GG-GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACG 8107 || || || || || ||||||||||| || || || || || | ||| || || || Sbjct 638356 GGCGTGGTCCGGTTGCCTTGGTCGTTGGCGATGATCTCCACCTTGCCGTGCTGGCACACC 638415 Query 8108 CCGACGCACGAATACGTTGTTCCTA 8132 || ||||| || || || || |||| Sbjct 638416 CCCACGCAGGAGTAGGTCGTGCCTA 638440 >seq77165 Length=3509557 Score = 82.4 bits (90), Expect = 1e-10 Identities = 187/276 (68%), Gaps = 8/276 (3%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || ||||| || || |||| || || ||||| | ||| || || || || | ||| || Sbjct 1655130 TCAAAATCATCCCCTCCCAGATGGGTGTCCCCAGAGGTGGCCTTCACCTCGAGGATGCCC 1655189 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || |||||| | | | || |||| || || || |||||||||||||| || || ||| Sbjct 1655190 CCGTCAATGGTGAGGACAGAGACATTGAAGGTTCCTCCACCCAGGTCAAAGATAAGCACG 1655249 Query 7577 TTCGTATCGTCGTCTTTGTT---CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 || || | || | ||| | || || || | ||| |||| || || || || | Sbjct 1655250 TT-GTGT--TCTCCATTGCTAGGGTTGTCTAGGCTGTAGGCGAGGGCGGCGGCTGTAGTC 1655306 Query 7634 TCATTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 ||| | | || | || ||| || |||||||| || | | |||||||| || || || Sbjct 1655307 TCACTGAGGATCCTCAGCACA-TTGAGGCCAGCGATCGCCCCAGCATCTTTGGTAGCCTG 1655365 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTAC 7728 || || || || || |||| ||| || || || || Sbjct 1655366 GCGCTGGGAGTCATTGAAGTGGGCTGGTACAGTAAC 1655401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634021134999320