Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq108923 158 3e-33 seq51508 123 6e-23 >seq108923 Length=1180579 Score = 158 bits (174), Expect = 3e-33 Identities = 172/227 (76%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || || | ||| || ||||| ||||| || || ||||| |||| || || Sbjct 1013528 TCTCAGGCGCAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGT 1013469 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| |||||||| || || ||||| | | || || |||||||||||||| Sbjct 1013468 GCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCC 1013409 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 |||||||||||| ||||| |||||| |||||||||||||| ||| |||||||| Sbjct 1013408 TTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACTTC 1013352 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||||| | || || || ||||| ||||| || || | ||||||| Sbjct 1013351 TAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATTT 1013305 Score = 145 bits (160), Expect = 2e-29 Identities = 157/207 (76%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||| ||||| || || ||||| |||| || || | ||||||||| | ||| Sbjct 1013738 GTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAACTG 1013679 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| | | || || |||||||||||||||||||||||||| ||||| Sbjct 1013678 CTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCTTGGATTTT 1013619 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 |||||| |||||||||||||| ||| ||||| || ||||| | || || || Sbjct 1013618 GGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTCTAGGGTGATGGTTTTGCC 1013562 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| ||||| || || | ||||| Sbjct 1013561 CGTCAAGGTTTTCACAAAGATCTGCAT 1013535 >seq51508 Length=10579796 Score = 123 bits (136), Expect = 6e-23 Identities = 163/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || ||||| || || ||||| || || || || ||||| || | || || Sbjct 7030248 TCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGT 7030307 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| ||||| ||||| || | || ||||| || || ||||| Sbjct 7030308 ACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCC 7030367 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||||||||| || || || |||||| |||||||| ||||| ||| || || || Sbjct 7030368 TTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATAGTGTC---ACTGGGCTCAACCTC 7030424 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || ||||| || || || || | ||||| Sbjct 7030425 TAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 7030469 Score = 122 bits (134), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || |||||||| || || || || ||||| || | || || | |||||||| Sbjct 7029805 ACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCC 7029864 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || | || ||||| || || |||||||||||||| || Sbjct 7029865 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGG 7029924 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| |||||||| ||||| ||| || || || ||||| | ||| Sbjct 7029925 ATCTTAGCCTTGACATTCTCAATAGTGTC---ACTGGGCTCAACCTCTAGGGTGATGGTC 7029981 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 7029982 TTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 7030013 Score = 118 bits (130), Expect = 2e-21 Identities = 162/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || ||||| || || ||||| || || || || ||||| || | || || Sbjct 7030020 TCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGT 7030079 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| ||||| ||||| || | || ||||| || || ||||| Sbjct 7030080 ACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCC 7030139 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||||||||| || || || |||||| |||||||| ||||| ||| || || || Sbjct 7030140 TTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATAGTGTC---ACTGGGCTCAACCTC 7030196 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || |||| || || || || | ||||| Sbjct 7030197 TAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 7030241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1107491140429641