Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq108923 118 7e-22 seq51508 107 1e-18 >seq108923 Length=1180579 Score = 118 bits (130), Expect = 7e-22 Identities = 167/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || |||| | || |||||||| | ||| ||||||||| ||||| ||||| || Sbjct 1013533 CCACCTCTCAGGCGCAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 1013474 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| ||||||||||| || | | ||||| ||| | || Sbjct 1013473 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAGGA 1013414 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || || ||||| || || ||||| || || || | |||| || ||| | Sbjct 1013413 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCCA 1013356 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985 | || | ||| |||||||| ||||| | || ||||||||||||||||| ||| Sbjct 1013355 CTTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATTTTC 1013303 Score = 118 bits (130), Expect = 7e-22 Identities = 167/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811 || || ||||| || | || |||||||| | ||| ||||||||| ||||| ||||| Sbjct 1013764 TTACCGCCCCTTAAACGCAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCG 1013705 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 || ||| | || |||| |||| ||| ||||||||||| || | | ||||| ||| | Sbjct 1013704 GACAGGGTGCGCCCATCTTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGA 1013645 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCT 34929 || | || || ||||| || || ||||| || || || | |||| || || Sbjct 1013644 GGAATGCCTTCTTTGTCTTGGATTTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCT 1013587 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || | ||| |||||||| ||||| | || |||||||||||||||||| Sbjct 1013586 CCACCTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATA 1013534 >seq51508 Length=10579796 Score = 107 bits (118), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 7029822 TTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCTGCAAA 7029881 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | |||||||| | || | || || ||||| ||||| ||||| | Sbjct 7029882 GATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTGAC--A 7029939 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || |||||| || | ||| ||||| || || || || |||||| Sbjct 7029940 TTCTCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTC 7029999 Query 34968 ACAAAGATCTGCATA 34982 ||||||||||||||| Sbjct 7030000 ACAAAGATCTGCATA 7030014 Score = 107 bits (118), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 7030050 TTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCTGCAAA 7030109 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | |||||||| | || | || || ||||| ||||| ||||| | Sbjct 7030110 GATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTGAC--A 7030167 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || |||||| || | ||| ||||| || || || || |||||| Sbjct 7030168 TTCTCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTC 7030227 Query 34968 ACAAAGATCTGCATA 34982 ||||||||||||||| Sbjct 7030228 ACAAAGATCTGCATA 7030242 Score = 102 bits (112), Expect = 5e-17 Identities = 142/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 7030278 TTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCTGCAAA 7030337 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | |||||||| | || | || || ||||| ||||| ||||| | Sbjct 7030338 GATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTGAC--A 7030395 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || |||||| || | ||| ||||| || || || | |||||| Sbjct 7030396 TTCTCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATGGTCTTGCCAGTCAAGGTCTTC 7030455 Query 34968 ACAAAGATCTGCATATT 34984 |||||||||||||| || Sbjct 7030456 ACAAAGATCTGCATGTT 7030472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324079602921144