Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq10001 111 2e-19 seq94266 93.3 5e-14 seq78831 93.3 5e-14 >seq10001 Length=4979691 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | ||| |||||||| || | |||||||| | ||||| || | Sbjct 1096739 CCTCATCTCTGCTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCT 1096798 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | ||||| || || || ||||| || ||||| ||||| || ||||| ||||||||||||| Sbjct 1096799 TCAACCAAAAGATGGATGCAAAGGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAAAG 1096858 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| | |||||| Sbjct 1096859 CTACTACACGTTCTCC 1096874 Score = 100 bits (110), Expect = 3e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 19221 TGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTAT 19280 || |||||||| || | |||||| | | |||||||||||||||||| || ||||| || Sbjct 1099776 TGGATCTTTAATGTAAGTATCTATGAGCAGACTGTACATTTCTGAATGTATGTTTTCCAT 1099835 Query 19281 AGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||| ||||| || || || ||||| | |||||||||| ||||||||| Sbjct 1099836 AGCAATCTGGAAGCCATAGAAACAGCGAGCTTCTGTTACCTGTACTTC 1099883 >seq94266 Length=584714 Score = 93.3 bits (102), Expect = 5e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||| ||||| || || | ||| ||| | || |||| |||||| || | Sbjct 80533 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCAATATGGATGT 80592 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | || || || ||||||||||| || || ||||| ||||||||||| | | || | Sbjct 80593 TCAGGGACTGGCTCTGATCAATGAAAGCGCCTCTGTCAGCTGCCATTTTGAGGATGGTCT 80652 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || ||||| ||||| ||||| | || || | ||| ||||| Sbjct 80653 TCTGGGAGATTTCCCAGACTGTCTTATAGAGCTGCTTCAAGTCATCTGG 80701 >seq78831 Length=713705 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||| || || | ||||| || ||||| | ||||||||||| || || || | Sbjct 197042 CCTCATCTCGGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCT 196983 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| ||||||| |||||| || || || ||||| || ||||| || || ||||| | Sbjct 196982 TCAGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACGGCAGCAAAGG 196923 Query 19103 CAACTAGTCTTTCTCC 19118 |||| | ||| || || Sbjct 196922 CAACCACTCTCTCCCC 196907 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/133 (74%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 19462 ACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGA 19521 || ||||| ||||||| || ||||| | ||| ||||||||||||||||||||||| | Sbjct 184870 ACCTCTTCTGCTGTCCAGAAGGAAGCTTGTGCCTTTTTATACATGTTCCATATATCCGGG 184811 Query 19522 TATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATAGGTTC--CATTT 19579 ||||| | || || || ||||||||| ||||| | | |||| ||| || ||||| Sbjct 184810 TATTGGAGTGGGAAGATGACAAATCTACGAGGATTTTTTCTGAGAAGAGGCTCTTCATTT 184751 Query 19580 TTTGAAAAATAAT 19592 | ||||| || Sbjct 184750 GGTTTAAAATCAT 184738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561124947993720