Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq89715 107 2e-17 seq108923 87.8 1e-11 >seq89715 Length=6364972 Score = 107 bits (118), Expect = 2e-17 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | || |||||||| || || |||||||| || || || || || Sbjct 2944421 GTTACTAATGCTGTGGTCACAGTACCAGCCTACTTCAATGACTCCCAGCGCCAGGCCACA 2944362 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||| || || ||||| || || || ||||||||||| || ||| Sbjct 2944361 AAAGATGCTGGAACCATTGCAGGTCTCAATGTGCTCCGGATCATCAATGAACCGACAGCT 2944302 Query 550511 GCTGCACTTGCATATGG 550527 ||||| |||| ||||| Sbjct 2944301 GCTGCTATTGCTTATGG 2944285 Score = 105 bits (116), Expect = 5e-17 Identities = 136/186 (73%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || ||||||||| |||||||||||| | ||| |||| || || ||| Sbjct 2945747 GGAATTGATCTTGGCACCACATATTCTTGTGTTGGTGTCTTCCAACATGGCAAGGTGGAA 2945688 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || |||||||||||||| |||||||| || || || ||| ||| | ||||| || || Sbjct 2945687 ATCATTGCCAATGATCAGGGTAACAGGACCACGCCGAGTTACGTTGCCTTCACAGATACA 2945628 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACCAATACTA 550175 || | |||||||||| ||||| | |||| || || |||||||| || || Sbjct 2945627 GAGAGGCTGATTGGTGATGCTGCAAAGAACCAAGTTGCAATG--AATCCTACTAACACAG 2945570 Query 550176 TTTTTG 550181 | |||| Sbjct 2945569 TCTTTG 2945564 >seq108923 Length=1180579 Score = 87.8 bits (96), Expect = 1e-11 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 |||||| || || ||||||||||| || | || |||||||| |||||||| |||||||| Sbjct 1013462 ATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTT 1013403 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAA 563437 ||||| ||||| || || |||||| || ||| || | | || ||| || || | Sbjct 1013402 GTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTG-GGCTCCACTTCTAGGGTGA 1013344 Query 563438 CAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||| || || | ||||| || || || ||||| Sbjct 1013343 TGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 1013307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4021890952256270