Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq53063 143 5e-29 seq94266 104 4e-17 seq78831 84.2 4e-11 >seq53063 Length=1747867 Score = 143 bits (158), Expect = 5e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 241414 CAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAG 241473 || ||| | ||| ||||||||||||||||| || | ||| || || || |||||||| Sbjct 519719 CATGACTTTCTGCTTGAGTTGGGCCACCTGATCTCTCAGGACATTAGCCGTGTTGGACAG 519660 Query 241474 TCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAG 241533 ||| || || |||| ||| ||| ||| ||||| || |||||||| || || | |||||| Sbjct 519659 TCCCGCATTCTCAGTCTTCAGCGTCTTGACTTTGTCTTCCAGCCGGGCTATCCTTTCCAG 519600 Query 241534 TTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTT 241593 || | | | ||| ||||| || |||| ||||||| || | ||| | |||| |||| Sbjct 519599 CTTCCTCTTCCTGCACTTGGTAGCCGCCAGCCGGTTCCTCAGCCGCTTCCTTTCCACCTT 519540 Query 241594 GATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||| | ||||| || ||||||| ||| |||||| Sbjct 519539 GATCCTCTCCTGATCTTCCATGTTGATGGGAGAC 519506 >seq94266 Length=584714 Score = 104 bits (114), Expect = 4e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||||| ||| || ||||||||||||||||| |||||| ||||||||||| ||| Sbjct 87702 GTATACTCCACGATTTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGG 87761 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| || ||| |||||||| |||||||| |||| ||||||||| ||| Sbjct 87762 TTGCTCTTCCTATTACAAGAGTCCTTGTACAGCATGTAAGGGGTCCCGGTCTCGGTCTGA 87821 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACC 213689 ||| | | || | |||||| | | ||||| |||||| Sbjct 87822 GACTCTATGATGGCGTACCAGAGCTGCTGAGCCTTCACCACC 87863 >seq78831 Length=713705 Score = 84.2 bits (92), Expect = 4e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || || ||||| |||||| | |||||||| || |||||||| | ||||||| || Sbjct 197040 TCATCTCGGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCTTC 196981 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 ||||| || || || || ||||| || ||||||||||| || ||||| || || || || Sbjct 196980 AGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACGGCAGCAAAGGC 196922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 929902349784320