Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq94266 120 6e-22 seq54353 120 6e-22 seq78831 87.8 3e-12 >seq94266 Length=584714 Score = 120 bits (132), Expect = 6e-22 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 222032 ACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGC 222091 |||| | ||||||||| || || ||||| || || ||||| ||||||| |||||| Sbjct 89249 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGC 89308 Query 222092 TCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGC 222151 |||||| ||| |||| ||| |||| || | ||||||||||||||| |||||| ||| Sbjct 89309 TCCTCCTTCCCGGTGTTCTTCTTCAGGTCAAGAAACTCAAAAATGTCCAAGTGCCATGGC 89368 Query 222152 TCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 |||||||||| ||| | || ||||||| || Sbjct 89369 TCCAGATAGATGGCAAAGGCCCCGGGTCTCT 89399 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 221730 CCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGG 221789 |||||||||| ||| ||||||||| | ||| ||||| || ||||||||||||||||||| Sbjct 87685 CCACCTCGTCTTTGCTGGTATACTCCACGATTTCTGTGCACAGGTTGCTGCACTTGATGG 87744 Query 221790 TCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCAT-AAAGGGA 221848 | ||||||| | || || ||| | ||| || ||||||||| ||||| ||||| Sbjct 87745 TTCCCAGGTTCTGCTGGTTGCTCTTCCTATTACAAGAGTCCTTGTACAGCATGTAAGGGG 87804 Query 221849 CCGCCAGTCTCCAGCTGAG 221867 | || ||||| ||||| Sbjct 87805 TC-CCGGTCTCGGTCTGAG 87822 >seq54353 Length=924 Score = 120 bits (132), Expect = 6e-22 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 222032 ACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGC 222091 |||| | ||||||||| || || ||||| || || ||||| ||||||| |||||| Sbjct 629 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGC 688 Query 222092 TCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGC 222151 |||||| ||| |||| ||| |||| || | ||||||||||||||| |||||| ||| Sbjct 689 TCCTCCTTCCCGGTGTTCTTCTTCAGGTCAAGAAACTCAAAAATGTCCAAGTGCCATGGC 748 Query 222152 TCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 |||||||||| ||| | || ||||||| || Sbjct 749 TCCAGATAGATGGCAAAGGCCCCGGGTCTCT 779 >seq78831 Length=713705 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||||||||| ||||| || ||||| ||| ||||| ||||| || || || | Sbjct 196917 TGGTTGCCTTTGCTGCCGTGGAAGGGATCTTCTTCTCAGGTTCTTTTGCTGCTATATTTT 196976 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||| ||| ||| ||| ||||| || ||| || ||||| |||||||| ||| | | Sbjct 196977 GGCTGAAGAAGAGGGGTCTGATGCCTGGACTGACATTCTCCAATGAGCTCATTAGCCGAG 197036 Query 26003 ACGAGG 26008 | |||| Sbjct 197037 ATGAGG 197042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927219054557120