Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq89715 120 2e-21 seq56950 89.7 3e-12 >seq89715 Length=6364972 Score = 120 bits (132), Expect = 2e-21 Identities = 232/337 (69%), Gaps = 4/337 (1%) Strand=Plus/Minus Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546 ||||| | || |||||||||||||| ||||| | || || ||| ||||| | | | Sbjct 2943941 CGTCTCCGCACAGCTTGTGAACGTGCAAAGCGTACCCTCTCCTCTAGCACTCAGGCCAGT 2943882 Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAA 475606 |||| |||| ||||| | ||| || ||||||| | | || ||||| || ||| Sbjct 2943881 ATTGAGATTGACTCTCTCTATGAGGGCATTGATTTTTACACCTCAATTACCAGAGCTCGT 2943822 Query 475607 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTC 475666 |||||||| | | ||||||| || | || | || || || || | | || Sbjct 2943821 TTTGAAGAGTTAAATGCTGATCTGTTCCGTGGCACTCTGGATCCTGTGGAGAAGGCCCTG 2943762 Query 475667 AGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726 | ||| | ||||| ||||||||||| ||||||| ||||| || || || || || || Sbjct 2943761 CGGGATGCCAAACTAGACAAATCACAGATCCATGATATTGTACTGGTTGGTGGGTCCACC 2943702 Query 475727 AGAAT-TCCAAAAATAAGAGAAATGCTTTCATCATAT-TTTAATGGTAAAAAGTTAAATG 475784 |||| |||| | | ||| || ||| | || || | || ||||| ||| || | || Sbjct 2943701 CGAATCCCCAAGATTCAGA-AACTGC-TGCAGGATTTCTTCAATGGCAAAGAGCTGAACA 2943644 Query 475785 AAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGC 475821 | || | ||||||||||||||||| || ||||| || Sbjct 2943643 AGAGCATCAATCCTGATGAAGCTGTGGCTTATGGTGC 2943607 Score = 107 bits (118), Expect = 1e-17 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || ||| |||| || | || || ||||| || || ||||| || || || || || || Sbjct 2944421 GTTACTAATGCTGTGGTCACAGTACCAGCCTACTTCAATGACTCCCAGCGCCAGGCCACA 2944362 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 |||||||| |||| ||||||||||| ||||| | || || || |||||||| ||||| Sbjct 2944361 AAAGATGCTGGAACCATTGCAGGTCTCAATGTGCTCCGGATCATCAATGAACCGACAGCT 2944302 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || ||||||||||| | || ||||| Sbjct 2944301 GCTGCTATTGCTTATGGTTTGGACAAGAA 2944273 Score = 87.8 bits (96), Expect = 1e-11 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 476028 TCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTG 476087 ||| |||||| || ||| | || ||||| || ||| || || | ||| | || Sbjct 2942440 TCTATGAAGGGGAGAGAGCCATGACAAAAGACAACAACTTGCTGGGCAAGTTTGAGCTGA 2942381 Query 476088 AAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATG 476147 || || ||||| ||||| || || || ||||| |||||||| || ||||||||||||| Sbjct 2942380 CTGGCATCCCTCCAGCTCCAAGGGGCGTACCTCAGATTGAAGTAACATTTGATATTGATG 2942321 Query 476148 CAAATGGTATTCTTAATGTTACTGCT 476173 | ||||| || |||||||| ||||| Sbjct 2942320 CCAATGGCATCCTTAATGTGTCTGCT 2942295 Score = 87.8 bits (96), Expect = 1e-11 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| |||| |||||| | || || || || |||||| | ||| | ||| |||| || Sbjct 2945753 GCAGTTGGAATTGATCTTGGCACCACATATTCTTGTGTTGGTGTCTTCCAACATGGCAAG 2945694 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| ||||||||||| || ||||| || || || || || ||| | || || Sbjct 2945693 GTGGAAATCATTGCCAATGATCAGGGTAACAGGACCACGCCGAGTTACGTTGCCTTCACA 2945634 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || || ||||| |||||||| || | |||| |||| |||||| ||| Sbjct 2945633 GATACAGAGAGGCTGATTGGTGATGCTGCAAAGAACCAAGTTGCAATGAATCCTACTAAC 2945574 Query 474509 ACTATTTTTGATGCTAAAAGA 474529 || | |||| | |||||| Sbjct 2945573 ACAGTCTTTGGTAAGAAAAGA 2945553 >seq56950 Length=6619669 Score = 89.7 bits (98), Expect = 3e-12 Identities = 120/162 (74%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 627729 ATCTCTAAAATTATA-AAATGCATAACAATAAGATTTATCACCATCACGTCCTGCTCTAC 627787 ||| ||| || |||| ||| ||| | || | ||| |||||||| ||||| ||||| | Sbjct 4930290 ATCACTATAACTATAGAAAAGCACA-CAGTGAGAAACTTCACCATCTCGTCCAGCTCTGC 4930348 Query 627788 CTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCAT-AATGTATTACTGCTCTC 627846 | |||||||||||||||||| ||| |||||| | | || ||| | || | Sbjct 4930349 CAGATTCTTGATAATAACCTTCCATAGATTTAGG-GAGAGATGCATGAACAACATAGCGT 4930407 Query 627847 ACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGCA 627888 ||||||| ||||| ||| ||||| ||||| |||||||||||| Sbjct 4930408 ACATCTGGTTTATCAATTCCCATGCCAAAAGCAATTGTTGCA 4930449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3262172934138404