Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq80053 203 4e-47 seq21106 149 7e-31 >seq80053 Length=12979540 Score = 203 bits (224), Expect = 4e-47 Identities = 651/995 (65%), Gaps = 25/995 (3%) Strand=Plus/Plus Query 160049 TCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATT 160108 || ||||| ||| |||| || || | ||||| |||||| || || || || || Sbjct 5108281 TCTCAGATATTCTTCCAAGCACTGAATTGCGAAGGGGTCAACATCAGTATCAAACTTGTT 5108340 Query 160109 TGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCA 160168 || || | |||||| |||| || ||||||| || |||||| || ||||| || Sbjct 5108341 AGCAAATAAATGGTGT---TTCTTTAACATCCAGTTCAAGTCTCCCACTCCAAACACACA 5108397 Query 160169 GACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACC 160228 || || || | || | || ||||| || || || | || ||||| | ||| || || Sbjct 5108398 CACAGAGCGCACATGAATTCCATTGCACGGAGGATAGGGGGCACCTTTTGACACATCCCC 5108457 Query 160229 TTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTT 160288 ||| | || |||||||||||||||||||| | || | |||||| || ||| || || Sbjct 5108458 TTCAAAATAATGCCACTTCACAAACCTGGCAAGAGCATTCATGTCAGAAACGTCATACTT 5108517 Query 160289 GTACATCAGG--GGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGG 160346 || || | || | ||| || || ||||| | || || | || | || ||||||| | Sbjct 5108518 GT-CA-CTGGAAGAAACAGCCCCTGGAACTTCAGGGATTCTTTGAATAGTAGCCCACAAG 5108575 Query 160347 TGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG--- 160403 | ||| || ||||| |||||||| |||| |||||| || || || |||| ||| Sbjct 5108576 TATTCATCAGGGCTATACGTGTCTTTAGCCCATTCAATAAATTCAAGGATTTTGCTGTTT 5108635 Query 160404 TCCCGCAGA-ACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAA 160462 || ||| | || | || | | || || ||||| || || ||||| ||||| Sbjct 5108636 TCTAGCACATACTCTACAAATCTCCTA-CTAGT---AACAAAATAGGCACTGCCAGAGAA 5108691 Query 160463 TATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTT 160522 | ||| | | ||| || | | |||||| || |||| | | || | Sbjct 5108692 AACAGGTGTACTAAGAGGTGGAGGTTGTTTGTCTATTCCCATGTTCTTTAGCTTACCATC 5108751 Query 160523 CACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGC--GGTGGCATGCGTTCCGTC 160580 || | | | | || ||||| | | |||| ||| | ||||| || || Sbjct 5108752 AACAATTTCATAGTGTTTTTTCCATC-GTATTTCTT-TGCTGGAAGGCATTTTCTCAGTT 5108809 Query 160581 TCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTG 160640 |||| ||||| |||| | || | ||||| | || || || || |||| ||||| Sbjct 5108810 TCTAAGCTGTTTTCACCCTTTAGGGCTTTCAATTTCTCCACCATTTCCTGGTTGGTCTTA 5108869 Query 160641 AGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGC 160700 | |||||||| |||| || | ||||||| || ||||| || | || || Sbjct 5108870 ATAGGAAAGTCCATACCACAAAGATTTATCAAATATTTCCAGTTTGTACTTCTCCTGTAG 5108929 Query 160701 AGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTC 160760 || || ||||||| || | |||||||| || | |||||| ||||| |||||||| || Sbjct 5108930 AGATCTTTCATGCAGTTGAGGTCTGCCTGTACCCTGCTCCACGAAGCATACACTACACTC 5108989 Query 160761 TCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCC---ACCACCGCC 160817 || | || ||||| | |||||| |||| |||||| ||||| |||||| || | ||| Sbjct 5108990 TCCAATTGGCTGGCAATAAAGACATTATTGAAACAGGACACAATTCCCTTAACTGCTGCC 5109049 Query 160818 AGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCG 160877 |||| || || | | |||| ||| || || | || || |||||||| || Sbjct 5109050 AGAA--AAGAT-TCTGGAGACTTTTTGTCAACATGAATACAGTAATAATTCTGAGGAGCA 5109106 Query 160878 TAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAG 160937 ||||| | || || | || || | ||| ||||| || |||| | ||| || || ||| Sbjct 5109107 TAGATTGATCTTAGAAGTCTATCAAGCATGTCTATTTTGTGATATACCACTATTGAATAG 5109166 Query 160938 GCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTG 160997 || || ||||| || | || || ||| || | | | | ||||| ||| ||||| Sbjct 5109167 GCAATTGGAAATTCAGCTTCTTCTTTACTGAGTGGTTCCATAATATACTTCCGCATCTTG 5109226 Query 160998 ATAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 ||||| | ||||||| ||||| || ||||| Sbjct 5109227 GTAAAAGAGGCACAATCTGTTGTCATATTAATATA 5109261 >seq21106 Length=1945072 Score = 149 bits (164), Expect = 7e-31 Identities = 603/938 (64%), Gaps = 34/938 (4%) Strand=Plus/Minus Query 160037 CAGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTC 160096 || ||| ||| || |||| ||| |||||||| |||| ||| | || || | | Sbjct 1330034 CACCGACTTGTAACGTAGATATTCCTCCAGACACTGGATTGCGTTTTCATCTACCTTTGG 1329975 Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 ||| || || || || | ||||||||| ||| || || |||||||| | || || Sbjct 1329974 GTCAAACTTGTTGGCTAGCAGATGGTG---GTTTTGGAGCATCCAGTGAAGATCACCTAC 1329918 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| |||| ||||| | ||| ||| | || | || |||||||| | || ||||| Sbjct 1329917 CCCATACACACAGACCGCCCGTTGGTGGGCACCCGTACACGGCGGGTAGGGTGCCCCTTT 1329858 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 | || || || || ||| | ||||||||| || || || | || | | ||||| Sbjct 1329857 CCTGACATCGCCCTCCAGGTAGTTCCACTTCACCAATCTAGCAACAGCATTGACATCGGA 1329798 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336 | || || || | | || || | || || | ||| ||||| || || ||||| Sbjct 1329797 GACCTCATACTTATTGTTATAAGGCACCGATCCTGGCATGCCTGGCATCCGGTGGAGGGT 1329738 Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT-CTCCGA 160395 |||||| | ||||| || |||||||| || || || ||||| |||| | || || || Sbjct 1329737 GGCCCAGATATGTTCATCTGGGCTGTAAGTATCTTTTGACCACTCCAGCAGCTGCTGCG- 1329679 Query 160396 TTAACCTGTCCCG----CAGAACGTGAGT-AACGTAGGATCTGGTCACGACAAAGTACGC 160450 | ||| | || | | | | ||| || || || || |||| || || Sbjct 1329678 -----CCGTCGGGTTTTCAAAGAGGGCTTGAACAAAGTCCCTTGTGACCACAACATAGGC 1329624 Query 160451 GCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTGTCT-TTGTCCTGACCGGTGTTAG 160509 |||| | ||| || ||| || ||||| | | || || |||| ||||| | Sbjct 1329623 ATTGCCCGTGAACATGGGTGAGGCCTGGGGCGG-GAGGCTCTTCTCCT---CGGTGGTTC 1329568 Query 160510 ACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCG--GTGG 160567 | ||| ||| ||| ||| | | |||||| | || |||| || | || Sbjct 1329567 GGATCACCGAGTTCTCCACGTGGTGGTGGTACTTCCAGCGAGCCTCCTTGATCGAAGAGG 1329508 Query 160568 CATGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTT--GACGATC 160625 | | || | || | | |||| |||| || | ||||| | || ||| ||| Sbjct 1329507 GTTTC--TCGGATTCCATATTGTTTTTCCCGTTTAGAAACTTCAG--GGTTCGGACAATC 1329452 Query 160626 TCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTC 160685 || ||| ||||||| || || ||||| ||||| ||| | | ||| |||| | Sbjct 1329451 TCGGCGTTGGTCTTGATGGGGAAATCGGTGCCGCAAGTGTTCAAGAGATACCTCCAAGGC 1329392 Query 160686 GCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAA 160745 || | | | | |||||| |||||| || | || || || || ||| |||||| Sbjct 1329391 ACGTTGCTCTTGAGTAGGTCCTCCATGCAGTTCAGGTCCGCTTGGACCCGGGACCAGGAC 1329332 Query 160746 GCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATT 160805 ||||||||||| |||| |||||| ||||||||||||| || ||||| ||||| |||| Sbjct 1329331 GCGTACACTACTCTCTCCAGTTTAGTGGCCACAAAGACATTTTCGAAGCACGAGGCGATC 1329272 Query 160806 CCCACCACCGCCAGAAAGAACATCTTATCC---GCCTTTCGGTCCACGTGCACGCAATAC 160862 || || ||| ||| | ||| | ||| | || ||||| || || || Sbjct 1329271 CCTCGGACTGCCTCCTTGAA---TTCGTCCAGGGATTTTAGATCTACGTGGACACAGTAT 1329215 Query 160863 AGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGG 160922 | ||||| |||| |||||||| ||| | ||| || ||||| ||||| ||||| | ||| Sbjct 1329214 ATATTCTGGGGCGTGTAGATGGACCTTAACAATCTTTCGAATATCTCAATCTTCTCATGC 1329155 Query 160923 ATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTC 160960 | || || || || || || ||||| || |||||| Sbjct 1329154 ACTACCATGGAATATGCAATAGGAAAATCCTCCTCCTC 1329117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576208900449480