Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq108923 129 1e-24 >seq108923 Length=1180579 Score = 129 bits (142), Expect = 1e-24 Identities = 177/246 (72%), Gaps = 1/246 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| || || |||| |||| || | ||||| || || |||||| Sbjct 1013536 ATACCACCTCTCAGGCGCAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCG 1013477 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || ||||||||||| || || ||||| ||||| ||| Sbjct 1013476 GACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGA 1013417 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| ||||||| || | ||| ||| || || | ||| Sbjct 1013416 GGAATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 1013357 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTAT-TAGT 193369 |||||||| || || ||||| || || | ||||| ||||| || |||||||| | || Sbjct 1013356 ACTTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATTTTCTGTACA 1013297 Query 193370 AAAATA 193375 |||||| Sbjct 1013296 AAAATA 1013291 Score = 111 bits (122), Expect = 3e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 193132 TACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGG 193191 |||| || || || || || |||| |||| || | ||||| || || ||||||| Sbjct 1013763 TACCGCCCCTTAAACGCAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGG 1013704 Query 193192 ATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAG 193251 | | || | ||| || || || ||||||||||| || || ||||| ||||| |||| Sbjct 1013703 ACAGGGTGCGCCCATCTTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAG 1013644 Query 193252 GTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAA 193311 | || |||||||| ||||| ||||||| || | ||| ||| || || | ||| | Sbjct 1013643 GAATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCA 1013584 Query 193312 CTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| || || ||||| || || | ||||| ||||| || ||||| Sbjct 1013583 CCTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 1013535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898079746149360