Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq108923 107 3e-18 >seq108923 Length=1180579 Score = 107 bits (118), Expect = 3e-18 Identities = 127/171 (74%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 155809 ATTTATGTA-ATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTA 155867 |||| |||| | |||||||| || ||| | ||||| ||||| || ||||| || || || Sbjct 1013292 ATTTTTGTACAGAAAATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTA 1013351 Query 155868 GAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGC 155927 ||||| || ||| | ||| || || || ||||| ||||| ||||||||| Sbjct 1013352 GAAGTGGAGCCCAGTGACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGC 1013411 Query 155928 ATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || |||||||| || || || ||||| | |||||| |||||||| |||||| Sbjct 1013412 ATTCCTCCAGATCAGCAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGAT 1013462 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| ||||| || ||||| || || |||| || || | Sbjct 1013535 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAGGTGGAGCCCAGT 1013594 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || ||||| ||||| ||||||||||| |||||||| || Sbjct 1013595 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAG 1013654 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||| | |||||| |||||| | |||||| Sbjct 1013655 CAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGAT 1013690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 730591013586800