Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq108923 89.7 9e-13 >seq108923 Length=1180579 Score = 89.7 bits (98), Expect = 9e-13 Identities = 167/244 (68%), Gaps = 1/244 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | || || || | || | ||||| || || || || Sbjct 1013536 ATACCACCTCTCAGGCGCAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCG 1013477 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || |||| || || || ||||| || || ||||| || || || Sbjct 1013476 GACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGA 1013417 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| ||||| || ||||| || || || | || Sbjct 1013416 GGAATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 1013357 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTAT-TATA 172078 |||||||| || |||||||| || || || ||||| | || ||||||||||| | || | Sbjct 1013356 ACTTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATTTTCTGTACA 1013297 Query 172079 AAAA 172082 |||| Sbjct 1013296 AAAA 1013293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903551751773400