Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq115251 150 2e-30 seq63303 150 2e-30 seq101037 129 7e-24 seq80054 111 2e-18 seq73500 111 2e-18 seq41101 102 1e-15 seq123362 96.9 4e-14 >seq115251 Length=269730 Score = 150 bits (166), Expect = 2e-30 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | |||||||||||||||||||||||| || | | ||| | Sbjct 192154 TGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGAGGTGATGG 192213 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| | |||||||| ||| ||||| | ||||| |||| |||| Sbjct 192214 TGGAGCGCTTGTTATAATGCGCCAGGCGGGACGCCTCCCCAGCAATGCGCTCGAAGATGT 192273 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| || || ||||||| ||| | |||| |||||| || ||||||||| | Sbjct 192274 CGTTGACGAAGGAATTCATGATGCCCATGGCCTTGGAGGAGATACCGGTGTCGGGGTGAA 192333 Query 1254526 CCTGCTTGAGCACCTTGTAGA 1254546 ||||||| ||||||||||||| Sbjct 192334 CCTGCTTCAGCACCTTGTAGA 192354 Score = 150 bits (166), Expect = 2e-30 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | |||||||||||||||||||||||| || | | ||| | Sbjct 221481 TGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGAGGTGATGG 221422 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| | |||||||| ||| ||||| | ||||| |||| |||| Sbjct 221421 TGGAGCGCTTGTTATAATGCGCCAGGCGGGACGCCTCCCCAGCAATGCGCTCGAAGATGT 221362 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| || || ||||||| ||| | ||| ||||||||| ||||||||| | Sbjct 221361 CGTTGACGAAGGAATTCATGATGCCCATGGCCTTAGAGGAGATGCCGGTGTCGGGGTGAA 221302 Query 1254526 CCTGCTTGAGCACCTTGTAGA 1254546 ||||||| ||||||||||||| Sbjct 221301 CCTGCTTCAGCACCTTGTAGA 221281 Score = 150 bits (166), Expect = 2e-30 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | |||||||||||||||||||||||| || | | ||| | Sbjct 229148 TGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGAGGTGATGG 229089 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| | |||||||| ||| ||||| | ||||| |||| |||| Sbjct 229088 TGGAGCGCTTGTTATAATGCGCCAGGCGGGACGCCTCCCCAGCAATGCGCTCGAAGATGT 229029 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| || || ||||||| ||| | ||| ||||||||| ||||||||| | Sbjct 229028 CGTTGACGAAGGAATTCATGATGCCCATGGCCTTAGAGGAGATGCCGGTGTCGGGGTGAA 228969 Query 1254526 CCTGCTTGAGCACCTTGTAGA 1254546 ||||||| ||||||||||||| Sbjct 228968 CCTGCTTCAGCACCTTGTAGA 228948 >seq63303 Length=3808 Score = 150 bits (166), Expect = 2e-30 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | |||||||||||||||||||||||| || | | ||| | Sbjct 1715 TGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGAGGTGATGG 1656 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| | |||||||| ||| ||||| | ||||| |||| |||| Sbjct 1655 TGGAGCGCTTGTTATAATGCGCCAGGCGGGACGCCTCCCCAGCAATGCGCTCGAAGATGT 1596 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| || || ||||||| ||| | |||| |||||| || ||||||||| | Sbjct 1595 CGTTGACGAAGGAATTCATGATGCCCATGGCCTTGGAGGAGATACCGGTGTCGGGGTGAA 1536 Query 1254526 CCTGCTTGAGCACCTTGTAGA 1254546 ||||||| ||||||||||||| Sbjct 1535 CCTGCTTCAGCACCTTGTAGA 1515 >seq101037 Length=894479 Score = 129 bits (142), Expect = 7e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | |||| ||||||||||||||||||| | | | ||| | Sbjct 854817 TGGCCAGCTCCCCGGGCAGCAGCAGGTGCACGGCGGTCTGGATCTCCCAGGAGGTGATGG 854876 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || || |||||| | ||| |||| ||| ||||| | ||||| |||| |||| Sbjct 854877 TGGAGCACTTGTTATAATGCCCCAGGCGGGACGCCTCCCCAGCAATGCGCTCGAAGATGT 854936 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 | |||||||| || ||||||| ||| | ||| ||||||||| ||||||||| | Sbjct 854937 CATTGACAAAGGAATTCATGATGCCCATGGCCTTAGAGGAGATGCCGGTGTCGGGGTGAA 854996 Query 1254526 CCTGCTTGAGCACCTTGTAGA 1254546 | ||||| ||||||||||||| Sbjct 854997 CTTGCTTCAGCACCTTGTAGA 855017 >seq80054 Length=2542904 Score = 111 bits (122), Expect = 2e-18 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 || |||| || | | ||| | ||||| ||| || ||||||||||| | | | ||| | Sbjct 1779378 TGACCAGCTCCCTGGGCAGCAGCAGGCACACAGCAGTCTGGATCTCCTGGGAGGTGATGG 1779437 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| | ||| |||| ||| ||||| | ||||| |||| |||| Sbjct 1779438 TGGAGCGCTTGTTATAATGCACCAGGCGGGACGCCTCCCCAGCAATGCGCTCGAAGATGT 1779497 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 | |||| || || ||||||| ||| | ||| ||||||||| ||||||||| | Sbjct 1779498 CATTGATGAAGGAATTCATGATGCCCATGGCCTTAGAGGAGATGCCGGTGTCGGGGTGAA 1779557 Query 1254526 CCTGCTTGAGCACCTTGTAGA 1254546 ||||||| ||||||||||||| Sbjct 1779558 CCTGCTTCAGCACCTTGTAGA 1779578 >seq73500 Length=2906579 Score = 111 bits (122), Expect = 2e-18 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || || ||| | ||||||||| |||||||||||||| || | ||| | Sbjct 430329 TGGCCAGCTCCCCCGGCAGAAGCAGGCGCACAGCGGTCTGGATCTCCCGGGAAGTGATGG 430388 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | ||||||||| | ||||||||||| || || |||| || |||| |||| Sbjct 430389 TCGAGCGCTTGTTGTAATGCGCCAGACGAGACGCTTCCCCAGCGATACGTTCGAATATGT 430448 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 |||| ||||| |||||||||| | ||||| ||| |||||| || ||| || || | Sbjct 430449 CGTTTACAAAGGAGTTCATGATCCCCATCGCCTTAGAGGAGATACCGGTGTCAGGATGAA 430508 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 | ||||| | |||||||| Sbjct 430509 CTTGCTTCAATACCTTGTA 430527 Score = 93.3 bits (102), Expect = 5e-13 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||||| || || ||| | ||||||||| |||||||||||||| || | ||| | Sbjct 507621 TGGCCAACTCCCCCGGCAAAAGCAGGCGCACAGCGGTCTGGATCTCTCGGGATGTGATGG 507562 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | |||||||| | ||||||||||| || || |||| || |||| |||| Sbjct 507561 TCGAACGCTTGTTGTAATGCGCCAGACGAGACGCTTCCCCAGCGATACGTTCGAAAATGT 507502 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 |||| ||||| |||||||| | ||| | ||| ||| ||||| ||| ||||| | Sbjct 507501 CGTTTACAAAGGAGTTCATAATGCCCATGGCCTTAGAGGAAATGCCGGTGTCCGGGTGAA 507442 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 | ||||| | ||| ||||| Sbjct 507441 CTTGCTTCAACACTTTGTA 507423 Score = 93.3 bits (102), Expect = 5e-13 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || || ||| | |||||| || |||||||||||||| || | ||| | Sbjct 671986 TGGCCAGCTCCCCCGGCAGAAGCAGGCGTACAGCGGTCTGGATCTCCCGTGAAGTGATGG 672045 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | |||||||| | || ||||| || || || | ||||| |||| |||| Sbjct 672046 TTGAACGCTTGTTGTAATGAGCCAGGCGAGACGCTTCCCCCGCAATGCGCTCGAAGATGT 672105 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 | || ||||| |||||||||| | ||||| ||| ||| || || ||| ||||| | Sbjct 672106 CATTTACAAAAGAGTTCATGATCCCCATCGCCTTAGAGGAAATACCGGTGTCCGGGTGAA 672165 Query 1254526 CCTGCTTGAGCACCTTGTAGA 1254546 | ||||| | ||| ||||||| Sbjct 672166 CTTGCTTCAACACTTTGTAGA 672186 Score = 87.8 bits (96), Expect = 2e-11 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || || ||| | ||||||||| || ||||||||||| || | ||| | Sbjct 619170 TGGCCAGCTCCCCCGGCAGAAGCAGGCGCACAGCAGTCTGGATCTCCCGAGAAGTGATGG 619111 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | |||||||| | || ||||| || || || | ||||| |||| |||| Sbjct 619110 TTGAACGCTTGTTGTAATGAGCCAGGCGAGACGCTTCCCCCGCAATGCGCTCGAAGATGT 619051 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 | || ||||| |||||||||| | ||||| ||| ||| || || ||| ||||| | Sbjct 619050 CATTTACAAAAGAGTTCATGATCCCCATCGCCTTAGAGGAAATACCGGTGTCCGGGTGAA 618991 Query 1254526 CCTGCTTGAGCACCTTGTAGA 1254546 | || || | ||| ||||||| Sbjct 618990 CTTGTTTCAACACTTTGTAGA 618970 >seq41101 Length=2982937 Score = 102 bits (112), Expect = 1e-15 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427 |||||||||||||||||||||||| || | | ||| || ||||||||| | ||| | Sbjct 1296005 CAGGCGCACGGCGGTCTGGATCTCCCGAGCGGTGATGTTGGAGCGCTTGTTATAATGCAC 1295946 Query 1254428 CAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAC 1254487 ||| ||| ||||| | | || | |||| || | |||| || || ||||||| Sbjct 1295945 CAGGCGGGACGCCTCCCTAGCAATATGCTCGAAGATATAATTGATGAAGGAATTCATGAT 1295886 Query 1254488 CGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGA 1254546 ||| | ||| |||||||| ||||||||| |||||||| ||||||||||||| Sbjct 1295885 GCCCATGGCCTTAGAAGAGATGCCGGTGTCGGGGTGAACCTGCTTCAGCACCTTGTAGA 1295827 >seq123362 Length=217665 Score = 96.9 bits (106), Expect = 4e-14 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||| |||||| ||||||||||| |||||||| | |||||| |||||| Sbjct 109091 CGTCATCTCCTTCGACGGCTCCTACGTCAACTACCGCCACCTGGCGCTGCTGTGCGACAC 109032 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGCGCCGACCA 512169 |||| ||||||||| | ||||| |||| || ||||| |||||||| ||| Sbjct 109031 CATGACCTGCCGCGGGCACCTCATGGCCATCACCCGGCACGGGGTCAACCGCCAGGACAC 108972 Query 512170 CGGCTTCCTGTCGCGGGCCTCTTTCGAAGAGACCGT 512205 |||| ||| | | ||| ||||| ||||| || Sbjct 108971 CGGCCCCCTCATGAAGTGCTCCTTCGAGGAGACGGT 108936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6095648256892291