Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq108923 134 9e-27 seq51508 120 2e-22 >seq108923 Length=1180579 Score = 134 bits (148), Expect = 9e-27 Identities = 170/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 || || ||||| || | |||||||| ||| | |||| || ||||| ||||| ||||| Sbjct 1013764 TTACCGCCCCTTAAACGCAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCG 1013705 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || ||| ||||| |||| |||| ||||||||||| ||||||| | ||||| ||| | Sbjct 1013704 GACAGGGTGCGCCCATCTTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGA 1013645 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCT 34925 || | || || ||||| | ||||| ||||| || || || | ||| ||| || Sbjct 1013644 GGAATGCCTTCTTTGTCTTGGATTTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCT 1013587 Query 34926 CGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || || | ||| ||||| || ||||| | ||| || |||||||||||||| Sbjct 1013586 CCACCTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 1013535 Score = 132 bits (146), Expect = 3e-26 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||| | |||||||| ||| | |||| || ||||| ||||| ||||| || Sbjct 1013533 CCACCTCTCAGGCGCAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 1013474 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| ||||| |||| ||||| ||||||||||| ||||||| | ||||| ||| | || Sbjct 1013473 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAGGA 1013414 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || || ||||| | ||||| ||||| || || || | ||| ||| ||| | Sbjct 1013413 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCCA 1013356 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| ||||| || ||||| | ||| || |||||||||||||| Sbjct 1013355 CTTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 1013307 >seq51508 Length=10579796 Score = 120 bits (132), Expect = 2e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||| || || || | ||| |||||||| ||||| ||||| || Sbjct 7029787 CCACCCCTCAGACGCAGCACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 7029846 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | || |||| ||||| ||||| || || |||||||| | |||||||| | || Sbjct 7029847 AGGGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 7029906 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || || ||||| | || || ||||| || || || | ||| ||| ||| | Sbjct 7029907 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGAC--ATTCTCAATAGTGTCACTGGGCTCAA 7029964 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || |||||||| |||||||||||||| Sbjct 7029965 CCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 7030013 Score = 120 bits (132), Expect = 2e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||| | ||| || || || | |||| |||||||| ||||| ||||| || Sbjct 7030015 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 7030074 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | || |||| ||||| ||||| || || |||||||| | |||||||| | || Sbjct 7030075 AGGGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 7030134 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || || ||||| | || || ||||| || || || | ||| ||| ||| | Sbjct 7030135 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGAC--ATTCTCAATAGTGTCACTGGGCTCAA 7030192 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || |||||||| |||||||||||||| Sbjct 7030193 CCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 7030241 Score = 116 bits (128), Expect = 2e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||| | ||| || || || | |||| |||||||| ||||| ||||| || Sbjct 7030243 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 7030302 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | || |||| ||||| ||||| || || |||||||| | |||||||| | || Sbjct 7030303 AGGGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 7030362 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || || ||||| | || || ||||| || || || | ||| ||| ||| | Sbjct 7030363 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGAC--ATTCTCAATAGTGTCACTGGGCTCAA 7030420 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || | ||| |||||||| || || | |||||| ||||||||||||||| Sbjct 7030421 CCTCTAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATG 7030470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325136995364237