Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq108923 154 1e-32 >seq108923 Length=1180579 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| ||||| ||||| || || ||||||||||| || ||||| || || | Sbjct 1013533 CCACCTCTCAGGCGCAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 1013474 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || || || ||| | ||||| || |||||||| || ||| Sbjct 1013473 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAGGA 1013414 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||||||||| | ||| |||||| | || | |||||| | || ||| Sbjct 1013413 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACT 1013354 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || |||||||| || |||||||| ||||| ||||||||||| Sbjct 1013353 TCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATTTT 1013304 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| |||||||| ||||| || || ||||||||||| || ||||| || || | Sbjct 1013761 CCGCCCCTTAAACGCAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 1013702 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || | || || || ||| | ||||| || |||||||| || ||| Sbjct 1013701 AGGGTGCGCCCATCTTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAGGA 1013642 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||||||||| | ||| |||||| | || | |||||| | || || Sbjct 1013641 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 1013582 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || |||||||| || |||||||| ||||| |||||||| Sbjct 1013581 TCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 1013535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384561811758243