Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq89715 127 2e-23 >seq89715 Length=6364972 Score = 127 bits (140), Expect = 2e-23 Identities = 362/549 (66%), Gaps = 8/549 (1%) Strand=Plus/Plus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 |||||||| || ||||||||||||||||| | | | || || | ||| |||||||| Sbjct 2943607 GCACCATAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAG 2943666 Query 281837 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 |||| || |||| ||| | ||| || || || | || || ||||| | |||||| Sbjct 2943667 AAATCCTGCAGCAGTT-TCTGAATCTTGGGGATTCGGGTGGACCCACCAACCAGTACAAT 2943725 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 ||||| | ||||||||| || ||||| | |||| | | || || || || || || Sbjct 2943726 ATCATGGATCTGTGATTTGTCTAGTTTGGCATCCCGCAGGGCCTTCTCCACAGGATCCAG 2943785 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 282015 | | | |||| || | | | ||||| || |||||| |||| | | | Sbjct 2943786 AGTGCCACGGAACAGATCAGCATTTAACTCTTCAAAACGAGCTCTGGTAATTGAGGTGTA 2943845 Query 282016 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 282075 | ||||||| || || | | ||| |||| ||||| | | ||||| ||| || || Sbjct 2943846 AAAATCAATGCCCTCATAGAGAGAGTCAATCTCAATACTGGCCTGAGTGCTAGAGGAGAG 2943905 Query 282076 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGAT-TGAT 282134 | ||| || ||||||||||| ||||| | || | || | || | | || | | | Sbjct 2943906 GGTACGCTTTGCACGTTCACAAGCTGTGCGGAGACGGCGAACTGC-TCTCTTGTTCTCAG 2943964 Query 282135 TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATT 282192 | | ||| | || | || | |||||| || | | | ||| | || | ||| || Sbjct 2943965 TAATATCCTTCTTGTGCTTCCGCTTGAATTCAGCGATGAA--ATGGTTGACCATACGGTT 2944022 Query 282193 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 282252 |||||| || || || ||||| | |||| |||| || | |||||| || | || Sbjct 2944023 ATCAAAGTCCTCCCCACCCAAGTGGGTATCACCTGCAGTTGACTTTACTTCAAAGATGCC 2944082 Query 282253 ATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 282312 ||| |||| || | | | ||||||| || |||||||| | ||||| ||||| || Sbjct 2944083 ATCCTCAATAGTGAGGATTGAAACATCAAAAGTGCCACCACCAAGGTCAAAGATAAGGAC 2944142 Query 282313 ATTCATTTC 282321 |||| |||| Sbjct 2944143 ATTCCTTTC 2944151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3733755862437198