Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq57837 120 5e-22 >seq57837 Length=2024552 Score = 120 bits (132), Expect = 5e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 58369 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGT 58428 |||||| | || ||||||||||||| | | || ||||| || || ||||| || ||| | Sbjct 1240389 GATAGCTGGTGCTTTATGGTGGTACTTTGTCTCAAAAGGAATTGAGTACTTGGACACAAT 1240330 Query 58429 GTTTTTCATACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTT 58488 |||||||| || ||||| || ||||| || | || || || || || ||||| ||||| Sbjct 1240329 ATTTTTCATCCTGAGGAAGAAATTTAACCAAATCAGTTTCCTTCATGTCTATCACCATTT 1240270 Query 58489 TACTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 |||||||| || || | ||| | ||||| || ||| || ||||||| || Sbjct 1240269 CACTATGTTCACCTTGTGGTGGATTGGTATCAAGTGGGTTCCAGGAGGACA 1240219 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 58673 CAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGCCCGTTTCCA 58732 || |||||| | || | || || || || ||||| ||||| || || || || || || Sbjct 1234347 CAGTTCCATGTGACTCTTGGCCACACAGCCATGTCTATTTATATCGACTGTCCCTTCCCT 1234288 Query 58733 AAATGGACGCAATGGTCAGTTATCATCTATTCTATTACTTTTATATTATTGTTTGGTAAC 58792 ||||||| ||| ||| || || |||||| |||| || ||||| || |||||||||||| Sbjct 1234287 AAATGGATGCACTGGGGTGTAATGATCTATGCTATCACCTTTATTTTCTTGTTTGGTAAC 1234228 Query 58793 TTCTATTTTAGAACATACAA 58812 ||||| | | | ||||| || Sbjct 1234227 TTCTACTATCGGACATATAA 1234208 Score = 89.7 bits (98), Expect = 9e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 58541 GCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGT 58600 || ||||| || || || ||||||||||||| |||||| ||||||| | || ||||| Sbjct 1236594 GCTTTTTTTGGAGCCCAAATGAATTCTTTTATTCATGTTGTTATGTACATGTACTATGGA 1236535 Query 58601 ATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATA 58660 | || || ||||| | || ||| | || ||| | |||||||| || ||| | || ||| Sbjct 1236534 TTAGCTGCCTGTGGCCCTAAATTTCAGAAATATCTTTGGTGGAAACGATACTTGACCATA 1236475 Query 58661 ATGCAATTGGTA 58672 | ||||||||| Sbjct 1236474 TTACAATTGGTA 1236463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 901829970669280