Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq80053 215 6e-51 seq21106 145 9e-30 >seq80053 Length=12979540 Score = 215 bits (238), Expect = 6e-51 Identities = 614/932 (66%), Gaps = 15/932 (2%) Strand=Plus/Plus Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126 |||| || ||||| || || | ||||| | ||||| ||| || ||| ||| Sbjct 5108276 TTATCTCTCAGATATTCTTCCAAGCACTGAATTGCGAAGGGGTCAACATCAGTATCAAAC 5108335 Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186 ||||| || || | || || ||||| || ||||| || | || ||| ||| ||| Sbjct 5108336 TTGTTAGCAAATAAATGGTGT---TTCTTTAACATCCAGTTCAAGTCTCCCACTCCAAAC 5108392 Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246 || ||||| || ||||| || | || ||||||| ||||| |||| || | |||| Sbjct 5108393 ACACACACAGAGCGCACATGAATTCCATTGCACGGAGGATAGGGGGCACCTTTTGACACA 5108452 Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306 ||||| || | || |||||||| || ||||| | | ||| | |||||| || ||| Sbjct 5108453 TCCCCTTCAAAATAATGCCACTTCACAAACCTGGCAAGAGCATTCATGTCAGAAACGTCA 5108512 Query 162307 TACTTGTACACTG-ACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365 ||||||| ||||| | | || || || ||||| | || | ||| || | ||||||||| Sbjct 5108513 TACTTGT-CACTGGAAGAAACAGCCCCTGGAACTTCAGGGATTCTTTGAATAGTAGCCCA 5108571 Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTT 162425 || || ||| || || |||||||| || || | ||| || || || || || | | Sbjct 5108572 CAAGTATTCATCAGGGCTATACGTGTCTTTAGCCCATTCAATAAATTCAAGGATTTTGCT 5108631 Query 162426 ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAAA 162485 | | ||| | || || | ||| | || ||| || || || ||||| || Sbjct 5108632 GTTTTCTAGCACATACTCTACAAATCTCCTACTAGTAACAAAATAGGCACTGCCAGAGAA 5108691 Query 162486 CACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCCTC 162545 || ||| | | | ||| || || | ||||||| ||| |||| || | | || || Sbjct 5108692 AACAGGTGTACTAAGAGGTGGAGGTTGTTTGTCTATTCCCATGTTCTTTAGCTTACCATC 5108751 Query 162546 TACGACCACGT-GTCTCTTCCTCCACCTGGCCATC-TTACTGGTAGACGGGTGTTCGGTC 162603 || | | | || | || |||| | | || || |||| || | | || || Sbjct 5108752 AACAATTTCATAGTGT-TTTTTCCATC-GTATTTCTTTGCTGGAAGGCATTTTCTCAGTT 5108809 Query 162604 TCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTA 162663 |||| ||||| |||| | ||| |||| | |||||| || | ||||||||| Sbjct 5108810 TCTAAGCTGTTTTCACCCTTTAGGGCTTTCAATTTCTCCACCATTTCCTGGTTGGTCTTA 5108869 Query 162664 AGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTAC 162723 | |||||||| | || || ||||| || | ||||||||| || || | ||| Sbjct 5108870 ATAGGAAAGTCCATACCACAAAGATTTATCAAATATTTCCAGTTTGTACTTCTCCTGTAG 5108929 Query 162724 AGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTC 162783 ||||| | | ||||| || || ||||| || | |||||||| || ||||| || ||| Sbjct 5108930 AGATCTTTCATGCAGTTGAGGTCTGCCTGTACCCTGCTCCACGAAGCATACACTACACTC 5108989 Query 162784 TCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGT 162843 ||||| |||| | ||||||||| | |||||| || || || ||| | || | | | Sbjct 5108990 TCCAATTGGCTGGCAATAAAGACATTATTGAAACAGGACACAATTCCCTTAACTG-CTGC 5109048 Query 162844 GAGAACA---TCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCG 162900 |||| | || || | || | || || || | ||||| ||||||||| || Sbjct 5109049 CAGAAAAGATTCTGG--AGACTTTTTGTCAACATGAATACAGTAATAATTCTGAGGAGCA 5109106 Query 162901 TAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATAC 162960 ||||| | || || | ||| || | ||| ||||| || || | |||||| || ||||| Sbjct 5109107 TAGATTGATCTTAGAAGTCTATCAAGCATGTCTATTTTGTGATATACCACTATTGAATAG 5109166 Query 162961 GCTATGGGGAACTCAGCCTCCTCGCGACTGAG 162992 || || || || ||||| || || |||||| Sbjct 5109167 GCAATTGGAAATTCAGCTTCTTCTTTACTGAG 5109198 >seq21106 Length=1945072 Score = 145 bits (160), Expect = 9e-30 Identities = 233/332 (70%), Gaps = 6/332 (2%) Strand=Plus/Minus Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714 |||||||| | ||| || ||||||||||| || | | ||| |||| ||| || Sbjct 1329445 TTGGTCTTGATGGGGAAATCGGTGCCGCAAGTGTTCAAGAGATACCTCCAAGGCACGTTG 1329386 Query 162715 AGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774 | || |||| | |||||||| || || ||||| || ||| ||||||||| Sbjct 1329385 CTCTTGAGTAGGTCCTCCATGCAGTTCAGGTCCGCTTGGACCCGGGACCAGGACGCGTAC 1329326 Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATC 162834 || || ||||||| ||||||| ||||||||||| ||||| ||||| | ||||| Sbjct 1329325 ACTACTCTCTCCAGTTTAGTGGCCACAAAGACATTTTCGAAGCACGAGGCGATCCCTCGG 1329266 Query 162835 ACGGCCAGTGAGAACATCGGGTCC---GCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891 || ||| ||| || |||| | ||| ||||||||| || ||||||| |||| Sbjct 1329265 ACTGCCTCCTTGAA-TTC--GTCCAGGGATTTTAGATCTACGTGGACACAGTATATATTC 1329209 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 || || | |||||||| ||| | ||||| ||||| ||||| ||||| | || || || Sbjct 1329208 TGGGGCGTGTAGATGGACCTTAACAATCTTTCGAATATCTCAATCTTCTCATGCACTACC 1329149 Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 || ||||| || || || || || ||||||| Sbjct 1329148 ATGGAATATGCAATAGGAAAATCCTCCTCCTC 1329117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577419577700800