Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq108923 143 2e-29 seq51508 87.8 1e-12 >seq108923 Length=1180579 Score = 143 bits (158), Expect = 2e-29 Identities = 173/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 33519 GTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATC 33578 || ||| || || ||||| | ||||| || || ||| ||||| || |||||||| || Sbjct 1013765 GTTACCGCCCCTTAAACGCAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTC 1013706 Query 33579 GGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTG 33638 ||| || ||||| | || ||||| || ||||||||||| ||||| | |||||||||| | Sbjct 1013705 GGACAGGGTGCGCCCATCTTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGG 1013646 Query 33639 CGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATT 33697 || | ||||||||||| ||||| | | |||| || | |||||| || | | Sbjct 1013645 AGGAATGCCTTCTTTGTCTTGGATTTT-GGCCTTGACATTCTCAATGGTGTCACTGGGCT 1013587 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| || | ||||| ||||| || || || ||||| ||||||||||||||| Sbjct 1013586 CCACCTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATA 1013534 Score = 140 bits (154), Expect = 2e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| || | ||||| || || ||| ||||| || |||||||| ||||| Sbjct 1013534 ACCACCTCTCAGGCGCAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGA 1013475 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || ||||||||||| ||||| | |||||||||| | || Sbjct 1013474 CAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAGG 1013415 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| ||||| | | |||| || | |||||| || | |||| Sbjct 1013414 AATGCCTTCTTTGTCTTGGATTTT-GGCCTTGACATTCTCAATGGTGTCACTGGGCTCCA 1013356 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| ||||| || || || ||||| |||||||||||||| Sbjct 1013355 CTTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 1013307 >seq51508 Length=10579796 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/234 (69%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||| | ||| | ||| || ||| || || || |||||||| || || Sbjct 7030242 ACCACCTCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 7030301 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || |||| || || || ||||| |||| | |||||| || | || Sbjct 7030302 CAGGGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGG 7030361 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| || || | | |||| || | ||||| || | || | Sbjct 7030362 GATGCCTTCTTTGTCCTGGATCTT-AGCCTTGACATTCTCAATAGTGTCACTGGGCTCAA 7030420 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 | || | ||||| || || || || || || || |||||||||||||| |||| Sbjct 7030421 CCTCTAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT-GTTG 7030473 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||| | ||| | ||| || ||| || || || |||||||| || || Sbjct 7030014 ACCACCTCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 7030073 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || |||| || || || ||||| |||| | |||||| || | || Sbjct 7030074 CAGGGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGG 7030133 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| || || | | |||| || | ||||| || | || | Sbjct 7030134 GATGCCTTCTTTGTCCTGGATCTT-AGCCTTGACATTCTCAATAGTGTCACTGGGCTCAA 7030192 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | || || ||||||||||||||| Sbjct 7030193 CCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATA 7030242 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| | ||| | ||| |||||| || || || |||||||| || || Sbjct 7029787 CCACCCCTCAGACGCAGCACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 7029846 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || |||| || || || ||||| |||| | |||||| || | || Sbjct 7029847 AGGGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 7029906 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| || || | | |||| || | ||||| || | || || Sbjct 7029907 ATGCCTTCTTTGTCCTGGATCTT-AGCCTTGACATTCTCAATAGTGTCACTGGGCTCAAC 7029965 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | || || ||||||||||||||| Sbjct 7029966 CTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATA 7030014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328143056660160