Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq108923 93.3 1e-13 >seq108923 Length=1180579 Score = 93.3 bits (102), Expect = 1e-13 Identities = 147/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| ||||| | || || ||||| ||||| | |||||||| Sbjct 1013304 AAAATG---CAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTGGAG 1013360 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 |||||| | || || ||| || || ||||| |||||||| ||| || Sbjct 1013361 CCCAGTGACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCA 1013420 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 || || || | ||||| |||||||||||| |||||||||| | || || |||| Sbjct 1013421 GATCAGCAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGAC 1013480 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||| |||||||||| || || || ||| Sbjct 1013481 TACAACATCCAGAAAGAATCCACCCTGCAC 1013510 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | || || ||||| ||||| | || ||||| |||| Sbjct 1013538 CAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAGGTGGAGCCCAGTGAC 1013597 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || || ||||| |||||||| ||| || || || Sbjct 1013598 ACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAGCAG 1013657 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| ||||||||||||||||||||||| | || || |||| |||||| || Sbjct 1013658 AGGTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGGCGCACCCTGTCCGACTACAACATC 1013717 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 |||||||| || || || ||| Sbjct 1013718 CAGAAAGAATCCACCCTGCAC 1013738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179700560672183