Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq72866 109 2e-20 seq128026 105 2e-19 seq105702 104 7e-19 seq46321 100 9e-18 seq133358 98.7 3e-17 seq108923 98.7 3e-17 seq84494 98.7 3e-17 seq54063 98.7 3e-17 seq137801 96.9 1e-16 seq73387 95.1 4e-16 seq48940 95.1 4e-16 seq47397 95.1 4e-16 seq44822 95.1 4e-16 seq99151 93.3 1e-15 seq120029 91.5 5e-15 seq45622 91.5 5e-15 seq135246 89.7 2e-14 seq133652 89.7 2e-14 seq13445 86.0 2e-13 seq3114 86.0 2e-13 seq65448 84.2 7e-13 seq64561 84.2 7e-13 seq55539 84.2 7e-13 seq48264 80.6 8e-12 seq53486 78.8 3e-11 >seq72866 Length=2008 Score = 109 bits (120), Expect = 2e-20 Identities = 65/68 (96%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || |||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 517 GCCGAAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 576 Query 2829 CCGGGCTT 2836 |||||||| Sbjct 577 CCGGGCTT 584 >seq128026 Length=192056 Score = 105 bits (116), Expect = 2e-19 Identities = 64/68 (94%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| | Sbjct 104206 GCTGAAGTAGCTCAGTTGGGCGAGCATTAGACTGAAGATCTAAAGGTCCCTGGGTCAATC 104265 Query 2829 CCGGGCTT 2836 || ||||| Sbjct 104266 CCAGGCTT 104273 Score = 104 bits (114), Expect = 7e-19 Identities = 63/67 (94%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 2774 AGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||| Sbjct 120487 AGTAGCTCAGTTGGGAGAGCATTAAACTGAAGATCTAAAGGTCCTTGGTTCAACCCTGGG 120428 Query 2834 CTTCAGC 2840 |||| || Sbjct 120427 CTTCGGC 120421 Score = 89.7 bits (98), Expect = 2e-14 Identities = 62/69 (90%), Gaps = 1/69 (1%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATC-TAAAGGTCCCTGGTTCAAC 2827 ||||||||| | |||| ||||||||||||||||||| || ||||||||||||||||||| Sbjct 97240 GCTGAAGTAACCCAGTAGGGAGAGCATTAGACTGAAACTCTTAAAGGTCCCTGGTTCAAC 97181 Query 2828 CCCGGGCTT 2836 || |||||| Sbjct 97180 CCTGGGCTT 97172 >seq105702 Length=1195636 Score = 104 bits (114), Expect = 7e-19 Identities = 63/67 (94%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||||||||||||||||||||||||||||||| |||| ||||||||||| || || Sbjct 1049695 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTCAAGGGCCCTGGTTCAATCCTGG 1049636 Query 2833 GCTTCAG 2839 ||||||| Sbjct 1049635 GCTTCAG 1049629 >seq46321 Length=24750 Score = 100 bits (110), Expect = 9e-18 Identities = 63/68 (93%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || |||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| | Sbjct 203 GCCGAAGGAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 262 Query 2829 CCGGGCTT 2836 |||||||| Sbjct 263 CCGGGCTT 270 >seq133358 Length=9325166 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 4379218 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 4379277 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 4379278 CCGGGTTTCGGC 4379289 >seq108923 Length=1180579 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1007799 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1007858 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1007859 CCGGGTTTCGGC 1007870 >seq84494 Length=11940747 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 3108227 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 3108168 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 3108167 CCGGGTTTCGGC 3108156 >seq54063 Length=1262493 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||||||||||||||||||||||||||| | ||||| | | Sbjct 1106065 GCTGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTTCATGGTTTGATC 1106006 Query 2829 CCGGGCTTCAGC 2840 ||||| |||||| Sbjct 1106005 CCGGGTTTCAGC 1105994 >seq137801 Length=2976552 Score = 96.9 bits (106), Expect = 1e-16 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 2765 TATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 ||| || ||| ||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 1195225 TATCGCAGAAATAGCTCAGTTGGGAGAGTGTTAGACTGAAGATCTAAAGGTTCCTGGTTC 1195284 Query 2825 AACCCCGGGCTTCAGC 2840 || ||||| |||||| Sbjct 1195285 AATCCCGGCTTTCAGC 1195300 >seq73387 Length=9726413 Score = 95.1 bits (104), Expect = 4e-16 Identities = 54/55 (98%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823 |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2466984 GCTGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2467038 >seq48940 Length=14666 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||||||||||||||||||||| ||||| |||||| ||| ||||||||||||||| | Sbjct 6323 GCTGAAGTAGCTCAGTTGGGAGAGTGTTAGAGTGAAGACCTAGAGGTCCCTGGTTCAATC 6264 Query 2829 CCGGGCTTCAGC 2840 || |||||| || Sbjct 6263 CCAGGCTTCGGC 6252 >seq47397 Length=4325436 Score = 95.1 bits (104), Expect = 4e-16 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 || ||| |||||||||||||||||||| ||||| |||||||||||||||| ||||||||| Sbjct 1100987 TGTCTGGAGTAGCTCAGTTGGGAGAGCGTTAGATTGAAGATCTAAAGGTCTCTGGTTCAA 1100928 Query 2827 CCCCGGGCTT 2836 || |||||| Sbjct 1100927 TCCTGGGCTT 1100918 >seq44822 Length=34929 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||||||||||||||||||||| ||||| |||||||||| ||||||||||||| | | Sbjct 22068 GCTGAAGTAGCTCAGTTGGGAGAGTGTTAGAGTGAAGATCTAGAGGTCCCTGGTTCGATC 22009 Query 2829 CCGGGCTTCAGC 2840 || | ||||||| Sbjct 22008 CCAGTCTTCAGC 21997 >seq99151 Length=2112439 Score = 93.3 bits (102), Expect = 1e-15 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||||||||||||||||||||||||||||||||||||||||||||| | || || Sbjct 738396 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTTGATCCTGG 738455 Query 2833 GCTT 2836 | || Sbjct 738456 GTTT 738459 >seq120029 Length=4706999 Score = 91.5 bits (100), Expect = 5e-15 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 263754 GCTAAGGTAACTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAGTC 263695 Query 2829 CCGGGCTT 2836 | ||||| Sbjct 263694 CTAGGCTT 263687 >seq45622 Length=29053 Score = 91.5 bits (100), Expect = 5e-15 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||||||||||||||| |||||||||||||||||||||| |||||| | ||| | Sbjct 1918 AAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCTCTGGTTTGATCCCAG 1859 Query 2833 GCTTCAGC 2840 |||| ||| Sbjct 1858 GCTTTAGC 1851 >seq135246 Length=157457 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| | Sbjct 25043 GCTGAAGTAGCTCAGTTGGGGGAGTGCCAGACTGAAGATCTACAGGTCCCTGGTTCAATC 25102 Query 2829 CCGGGCTTCAGC 2840 | || ||||||| Sbjct 25103 CTGGCCTTCAGC 25114 >seq133652 Length=326 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| | Sbjct 229 GCTGAAGTAGCTCAGTTGGGGGAGTGCCAGACTGAAGATCTACAGGTCCCTGGTTCAATC 288 Query 2829 CCGGGCTTCAGC 2840 | || ||||||| Sbjct 289 CTGGCCTTCAGC 300 >seq13445 Length=87653 Score = 86.0 bits (94), Expect = 2e-13 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||||||| |||||||||||||||||||| ||| || ||||||||| || ||| | Sbjct 78576 AAGTAGCTCAGTGGGGAGAGCATTAGACTGAAGCTCTGGAGATCCCTGGTTTAATCCCAG 78517 Query 2833 GCTTCAG 2839 ||||||| Sbjct 78516 GCTTCAG 78510 >seq3114 Length=120385 Score = 86.0 bits (94), Expect = 2e-13 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||||||| |||| ||||||||| ||||| |||| ||||||||||| ||| ||| | Sbjct 67405 AAGTAGCTCAGTGGGGAAAGCATTAGATTGAAGCTCTAGAGGTCCCTGGTGCAATCCCAG 67464 Query 2833 GCTTCAG 2839 ||||||| Sbjct 67465 GCTTCAG 67471 >seq65448 Length=783 Score = 84.2 bits (92), Expect = 7e-13 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||||||||||| ||| |||||||||||||||| ||||| ||||||||| ||| | Sbjct 289 AAGTAGCTCAGTTGGGTGAGTGTTAGACTGAAGATCTAGAGGTCTCTGGTTCAATCCCAG 230 Query 2833 GCTT 2836 |||| Sbjct 229 GCTT 226 >seq64561 Length=790 Score = 84.2 bits (92), Expect = 7e-13 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||||||||||| ||| |||||||||||||||| ||||| ||||||||| ||| | Sbjct 502 AAGTAGCTCAGTTGGGTGAGTGTTAGACTGAAGATCTAGAGGTCTCTGGTTCAATCCCAG 561 Query 2833 GCTT 2836 |||| Sbjct 562 GCTT 565 >seq55539 Length=6825 Score = 84.2 bits (92), Expect = 7e-13 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||||||||||| ||| |||||||||||||||| ||||| ||||||||| ||| | Sbjct 4577 AAGTAGCTCAGTTGGGTGAGTGTTAGACTGAAGATCTAGAGGTCTCTGGTTCAATCCCAG 4518 Query 2833 GCTT 2836 |||| Sbjct 4517 GCTT 4514 >seq48264 Length=16732 Score = 80.6 bits (88), Expect = 8e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||| | ||||| |||||||||||||||||||||||| ||| ||||||||||| ||| | Sbjct 2030 AAGTCGTTCAGTCAGGAGAGCATTAGACTGAAGATCTAGAGGGCCCTGGTTCAATCCCAG 2089 Query 2833 GCTT 2836 |||| Sbjct 2090 GCTT 2093 >seq53486 Length=7104 Score = 78.8 bits (86), Expect = 3e-11 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||||| |||| |||||||||||||||| |||||||||||| || || ||| | Sbjct 259 AAGTAGCTCAGCCAGGAGCGCATTAGACTGAAGATTTAAAGGTCCCTGCTTGAATCCCAG 318 Query 2833 GCTTCAGC 2840 ||||| || Sbjct 319 GCTTCGGC 326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15825326312835