Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq115251 161 1e-33 seq63303 161 1e-33 seq101037 134 2e-25 seq111699 127 3e-23 seq80054 116 5e-20 seq73500 114 2e-19 seq41101 98.7 1e-14 >seq115251 Length=269730 Score = 161 bits (178), Expect = 1e-33 Identities = 183/244 (75%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | ||||||||||||| |||||||| |||||| |||| | ||| Sbjct 192367 TACTCCATCTATGTCTACAAGGTGCTGAAGCAGGTTCACCCCGACACCGGT-----ATC- 192314 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||| |||| ||||| |||||||| || || ||||||||||| |||| ||||| | Sbjct 192313 TCCTCCAAGGCCATGGGCATCATGAATTCCTTCGTCAACGACATCTTCGAGCGCATTGCT 192254 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 ||||| |||||||||| | ||||||||| ||| ||| | | || |||||| Sbjct 192253 GGGGAGGCGTCCCGCCTGGCGCATTATAACAAGCGCTCCACCATCACCTCCCGGGAGATC 192194 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 |||||||||||||||||| | ||| ||| || ||||||| |||||||| || |||||| Sbjct 192193 CAGACCGCCGTGCGCCTGCTGCTGCCCGGGGAGCTGGCCAAACACGCCGTGTCTGAGGGC 192134 Query 725139 ACCA 725142 |||| Sbjct 192133 ACCA 192130 Score = 158 bits (174), Expect = 2e-32 Identities = 182/244 (75%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | ||||||||||||| |||||||| |||||| |||| |||| Sbjct 221268 TACTCCATCTATGTCTACAAGGTGCTGAAGCAGGTTCACCCCGACACCGG-----CATC- 221321 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||| ||| ||||| |||||||| || || ||||||||||| |||| ||||| | Sbjct 221322 TCCTCTAAGGCCATGGGCATCATGAATTCCTTCGTCAACGACATCTTCGAGCGCATTGCT 221381 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 ||||| |||||||||| | ||||||||| ||| ||| | | || |||||| Sbjct 221382 GGGGAGGCGTCCCGCCTGGCGCATTATAACAAGCGCTCCACCATCACCTCCCGGGAGATC 221441 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 |||||||||||||||||| | ||| ||| || ||||||| |||||||| || |||||| Sbjct 221442 CAGACCGCCGTGCGCCTGCTGCTGCCCGGGGAGCTGGCCAAACACGCCGTGTCTGAGGGC 221501 Query 725139 ACCA 725142 |||| Sbjct 221502 ACCA 221505 Score = 158 bits (174), Expect = 2e-32 Identities = 182/244 (75%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | ||||||||||||| |||||||| |||||| |||| |||| Sbjct 228935 TACTCCATCTATGTCTACAAGGTGCTGAAGCAGGTTCACCCCGACACCGG-----CATC- 228988 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||| ||| ||||| |||||||| || || ||||||||||| |||| ||||| | Sbjct 228989 TCCTCTAAGGCCATGGGCATCATGAATTCCTTCGTCAACGACATCTTCGAGCGCATTGCT 229048 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 ||||| |||||||||| | ||||||||| ||| ||| | | || |||||| Sbjct 229049 GGGGAGGCGTCCCGCCTGGCGCATTATAACAAGCGCTCCACCATCACCTCCCGGGAGATC 229108 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 |||||||||||||||||| | ||| ||| || ||||||| |||||||| || |||||| Sbjct 229109 CAGACCGCCGTGCGCCTGCTGCTGCCCGGGGAGCTGGCCAAACACGCCGTGTCTGAGGGC 229168 Query 725139 ACCA 725142 |||| Sbjct 229169 ACCA 229172 >seq63303 Length=3808 Score = 161 bits (178), Expect = 1e-33 Identities = 183/244 (75%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | ||||||||||||| |||||||| |||||| |||| | ||| Sbjct 1502 TACTCCATCTATGTCTACAAGGTGCTGAAGCAGGTTCACCCCGACACCGGT-----ATC- 1555 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||| |||| ||||| |||||||| || || ||||||||||| |||| ||||| | Sbjct 1556 TCCTCCAAGGCCATGGGCATCATGAATTCCTTCGTCAACGACATCTTCGAGCGCATTGCT 1615 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 ||||| |||||||||| | ||||||||| ||| ||| | | || |||||| Sbjct 1616 GGGGAGGCGTCCCGCCTGGCGCATTATAACAAGCGCTCCACCATCACCTCCCGGGAGATC 1675 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 |||||||||||||||||| | ||| ||| || ||||||| |||||||| || |||||| Sbjct 1676 CAGACCGCCGTGCGCCTGCTGCTGCCCGGGGAGCTGGCCAAACACGCCGTGTCTGAGGGC 1735 Query 725139 ACCA 725142 |||| Sbjct 1736 ACCA 1739 >seq101037 Length=894479 Score = 134 bits (148), Expect = 2e-25 Identities = 169/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| ||||| || |||||| |||| |||| ||| ||| ||| Sbjct 855017 TCTACAAGGTGCTGAAGCAAGTTCACCCCGACACCGG-----CATC-TCCTCTAAGGCCA 854964 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || |||||||| || |||||||| ||||| |||| ||||| | ||||| | Sbjct 854963 TGGGCATCATGAATTCCTTTGTCAATGACATCTTCGAGCGCATTGCTGGGGAGGCGTCCC 854904 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 |||||| || | |||||| || ||| ||| | | | ||||||||||||||||||| Sbjct 854903 GCCTGGGGCATTATAACAAGTGCTCCACCATCACCTCCTGGGAGATCCAGACCGCCGTGC 854844 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| | ||| ||| || ||||||| |||||||| || |||||||||| Sbjct 854843 ACCTGCTGCTGCCCGGGGAGCTGGCCAAACACGCCGTGTCTGAGGGCACCA 854793 >seq111699 Length=901075 Score = 127 bits (140), Expect = 3e-23 Identities = 135/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| ||||| ||||||||||| || || |||||| | |||| ||||||| ||| ||| Sbjct 583369 AAGGCCATGAGCATCATGAACTCCTTCGTGAACGACGTCTTCGAGCGCATCGCCACGGAG 583310 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 ||| ||||| |||| | |||||||||| ||| ||| || |||||| | || || Sbjct 583309 GCCTCCCGCCTCGCGCAATACAACAAGCGCTCCACCATCACCAGTCGCGAGGTGCAAACT 583250 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| ||| || | ||| || || ||||||| ||| ||||| ||||||||||||| Sbjct 583249 GCCGTCCGCTTGCTGCTGCCGGGGGAGCTGGCCAAGCATGCCGTGTCCGAGGGCACCA 583192 >seq80054 Length=2542904 Score = 116 bits (128), Expect = 5e-20 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| |||| |||| ||| ||| ||| Sbjct 1779578 TCTACAAGGTGCTGAAGCAGGTTCACCCCGACACCGG-----CATC-TCCTCTAAGGCCA 1779525 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || |||||||| || || |||| ||||| |||| ||||| | ||||| | Sbjct 1779524 TGGGCATCATGAATTCCTTCATCAATGACATCTTCGAGCGCATTGCTGGGGAGGCGTCCC 1779465 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 |||||| || | ||||||||| ||| ||| | | | ||||||||||| || ||| Sbjct 1779464 GCCTGGTGCATTATAACAAGCGCTCCACCATCACCTCCCAGGAGATCCAGACTGCTGTGT 1779405 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| | | || |||| || |||||||| || |||||||||| Sbjct 1779404 GCCTGCTGCTGCCCAGGGAGCTGGTCAAACACGCCGTGTCTGAGGGCACCA 1779354 >seq73500 Length=2906579 Score = 114 bits (126), Expect = 2e-19 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| | ||| |||||||||||| ||||| |||||||| |||| || |||| || Sbjct 430482 AAGGCGATGGGGATCATGAACTCCTTTGTAAACGACATATTCGAACGTATCGCTGGGGAA 430423 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || ||| ||||||| | |||||||||| || ||| | || |||||||||||| Sbjct 430422 GCGTCTCGTCTGGCGCATTACAACAAGCGCTCGACCATCACTTCCCGGGAGATCCAGACC 430363 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||||||||| | ||| || || ||||||| |||||||| || |||||||| Sbjct 430362 GCTGTGCGCCTGCTTCTGCCGGGGGAGCTGGCCAAACACGCCGTGTCTGAGGGCAC 430307 Score = 107 bits (118), Expect = 3e-17 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||| ||| | ||||| || ||||| |||| | ||||| || | | | Sbjct 672186 TCTACAAAGTGTTGAAGCAAGTTCACCCGGACACCGGTATT---TCCTCTAA---GGCGA 672133 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || |||||||||||| ||||| || ||||| |||| ||||| | || || || Sbjct 672132 TGGGGATCATGAACTCTTTTGTAAATGACATCTTCGAGCGCATTGCGGGGGAAGCGTCTC 672073 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | | ||||||||| || ||| | || |||||||||||||| || | Sbjct 672072 GCCTGGCTCATTACAACAAGCGTTCAACCATCACTTCACGGGAGATCCAGACCGCTGTAC 672013 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| || || ||||||| |||||||| || |||||||||| Sbjct 672012 GCCTGCTTCTGCCGGGGGAGCTGGCCAAACACGCCGTGTCTGAGGGCACCA 671962 Score = 105 bits (116), Expect = 1e-16 Identities = 130/178 (73%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| | ||| |||||||||||| ||||| || ||||| |||| ||||| | || Sbjct 619017 AAGGCGATGGGGATCATGAACTCTTTTGTAAATGACATCTTCGAGCGCATTGCGGGGGAA 619076 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || ||||||||| | | ||||||||| || ||| | || ||||||||||| Sbjct 619077 GCGTCTCGCCTGGCTCATTACAACAAGCGTTCAACCATCACTTCTCGGGAGATCCAGACT 619136 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||||||||| | ||| || || ||||||| |||||||| || |||||||||| Sbjct 619137 GCTGTGCGCCTGCTTCTGCCGGGGGAGCTGGCCAAACACGCCGTGTCTGAGGGCACCA 619194 Score = 93.3 bits (102), Expect = 6e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| ||||| || |||||||| ||||| |||||||| |||| || |||| || Sbjct 507468 AAGGCCATGGGCATTATGAACTCCTTTGTAAACGACATTTTCGAACGTATCGCTGGGGAA 507527 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || ||| ||||||| | ||||||||| || ||| | || |||||||||||| Sbjct 507528 GCGTCTCGTCTGGCGCATTACAACAAGCGTTCGACCATCACATCCCGAGAGATCCAGACC 507587 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||||||||| | ||| || || |||||| ||||| || || ||||| || Sbjct 507588 GCTGTGCGCCTGCTTTTGCCGGGGGAGTTGGCCAAACACGCTGTGTCTGAGGGTAC 507643 >seq41101 Length=2982937 Score = 98.7 bits (108), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| |||| |||| || ||| ||| Sbjct 1295827 TCTACAAGGTGCTGAAGCAGGTTCACCCCGACACCGG-----CATC-TCTTCTAAGGCCA 1295880 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || |||||||| || || |||| | || |||| | || | | ||||| | Sbjct 1295881 TGGGCATCATGAATTCCTTCATCAATTATATCTTCGAGCATATTGCTAGGGAGGCGTCCC 1295940 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 |||||| || | ||||||||| || ||| | | || ||||||||||||||||||| Sbjct 1295941 GCCTGGTGCATTATAACAAGCGCTCCAACATCACCGCTCGGGAGATCCAGACCGCCGTGC 1296000 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| | | || |||| | || || || || |||||||||| Sbjct 1296001 GCCTGCTGGTGCCCAGGGAGTTGGCTAAACATGCTGTGTCTGAGGGCACCA 1296051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7164305724287726