Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq108923 131 2e-25 seq51508 111 1e-19 >seq108923 Length=1180579 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| |||| || ||| ||| | || ||||||||||| || ||||| Sbjct 1013497 TCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAG 1013438 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| |||||| || | ||||| || || ||||| ||| || ||| | | | Sbjct 1013437 ATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTC 1013378 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | ||||| || | ||||| ||||| |||||||| ||||||||| Sbjct 1013377 TCAATGGTGTCACTGGGCTCCACTTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACA 1013318 Query 35726 AATATCTGCATT 35737 || ||||||||| Sbjct 1013317 AAGATCTGCATT 1013306 Score = 129 bits (142), Expect = 5e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| |||| || ||| ||| | || |||| |||||| || ||||| Sbjct 1013725 TCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAACTGCTTTCCGGCAAAG 1013666 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| |||||| || | ||||| || || ||||| ||| || ||| | | | Sbjct 1013665 ATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTC 1013606 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||| | ||||| ||||| |||||||| ||||||||| Sbjct 1013605 TCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACA 1013546 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 1013545 AAGATCTGCAT 1013535 >seq51508 Length=10579796 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | || ||| || | || ||||||||||| || ||||| Sbjct 7030279 TCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAG 7030338 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | || | || || |||||| |||||| ||| | | | Sbjct 7030339 ATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTC 7030398 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || ||||| | ||||| || || || ||||| || |||||| Sbjct 7030399 TCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACA 7030458 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 7030459 AAGATCTGCAT 7030469 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | || ||| || | || ||||||||||| || ||||| Sbjct 7029823 TCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAG 7029882 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | || | || || |||||| |||||| ||| | | | Sbjct 7029883 ATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTC 7029942 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || ||||| | ||||| || || || |||| || |||||| Sbjct 7029943 TCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACA 7030002 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 7030003 AAGATCTGCAT 7030013 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | || ||| || | || ||||||||||| || ||||| Sbjct 7030051 TCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAG 7030110 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | || | || || |||||| |||||| ||| | | | Sbjct 7030111 ATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTC 7030170 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || ||||| | ||||| || || || |||| || |||||| Sbjct 7030171 TCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACA 7030230 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 7030231 AAGATCTGCAT 7030241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450004581596840