Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq78831 129 8e-25 seq10001 125 1e-23 seq94266 84.2 3e-11 >seq78831 Length=713705 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||| ||||| | || || || ||||| ||||||||||| ||||| | ||| | Sbjct 197042 CCTCATCTCGGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCT 196983 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||||||||| ||||||||||| || || |||||||| ||||| || || ||||| | Sbjct 196982 TCAGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACGGCAGCAAAGG 196923 Query 39759 CAACAAGTCTCTCTCC 39774 |||| | |||||| || Sbjct 196922 CAACCACTCTCTCCCC 196907 Score = 93.3 bits (102), Expect = 6e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 40115 ACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGA 40174 || ||||| |||||||| || || || | ||||||||| ||||||||||||||||| | Sbjct 184870 ACCTCTTCTGCTGTCCAGAAGGAAGCTTGTGCCTTTTTATACATGTTCCATATATCCGGG 184811 Query 40175 TATTGTATTGGAAAAATAACAAATCTATTTGGATTTTTT 40213 ||||| | ||| || || ||||||||| ||||||||| Sbjct 184810 TATTGGAGTGGGAAGATGACAAATCTACGAGGATTTTTT 184772 >seq10001 Length=4979691 Score = 125 bits (138), Expect = 1e-23 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | |||||||||||| |||||||||||||||| || | ||| | Sbjct 1096739 CCTCATCTCTGCTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCT 1096798 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | |||||| |||| ||||| || ||||| |||||||| ||||| ||||||||||| | Sbjct 1096799 TCAACCAAAAGATGGATGCAAAGGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAAAG 1096858 Query 39759 CAAC 39762 | || Sbjct 1096859 CTAC 1096862 Score = 93.3 bits (102), Expect = 6e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||||| || |||||||| | |||||| |||||||||||||| |||||||| || || Sbjct 1099779 ATCTTTAATGTAAGTATCTATGAGCAGACTGTACATTTCTGAATGTATGTTTTCCATAGC 1099838 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 ||||| || || || ||||| | ||||| || | ||||| ||| Sbjct 1099839 AATCTGGAAGCCATAGAAACAGCGAGCTTCTGTTACCTGTACTTCT 1099884 >seq94266 Length=584714 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 ||||| || ||||| | |||| || ||||| || |||||||| || ||||| | || Sbjct 83283 TGAAACTCGCCAGAGAGAACTCGGCGTGTGTAGATGTTACTGGTGTAGGGTTCAATGGAC 83342 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||| || |||| || |||||||| || ||||||||||| || | | | || || Sbjct 83343 TCATTGTTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATTGGAGAAAGGAGTAGGCTG 83402 Query 68839 TTTCTAAGACC 68849 ||||||| ||| Sbjct 83403 TTTCTAACACC 83413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685706512113720