Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq76943 127 2e-24 seq10001 109 4e-19 seq78831 100 2e-16 seq17775 82.4 6e-11 >seq76943 Length=1194919 Score = 127 bits (140), Expect = 2e-24 Identities = 121/155 (78%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCA 41108 ||||| ||||| || || || | || |||||||| ||| |||||||||||||| Sbjct 632626 ATGGCTTTGCCTCCATGCCACGCTCTGTGCCAGTTTTATGTTCTAAATGGTGAACTGTCT 632567 Query 41109 TGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGT 41168 || || |||||||| ||||| || ||||||||||| ||||| || || || || || ||| Sbjct 632566 TGCCAGTTGTATCAGAGATCTGGAGACATGGGACTCGGGGTGCCTTTCAATATTGCCAGT 632507 Query 41169 TATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 ||| | || ||||||||||||||||| || || || Sbjct 632506 TATTCACTTCTCACGTATATGATTGCCCATGTCAC 632472 >seq10001 Length=4979691 Score = 109 bits (120), Expect = 4e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| || || ||||||| || ||||| ||||| || || ||||| || ||||| Sbjct 1099886 CAAGAAGTACAGGTAACAGAAGCTCGCTGTTTCTATGGCTTCCAGATTGCTATGGAAAAC 1099827 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||||||||| || |||||||| ||||| |||||| Sbjct 1099826 ATACATTCAGAAATGTACAGTCTGCTCATAGATACTTACATTAAAGAT 1099779 >seq78831 Length=713705 Score = 100 bits (110), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 ||||||| |||||||| ||||| |||||||| ||||||| |||||||| || ||||| | Sbjct 210362 AAAACCCTTTTGATTTCATGGAGAATATTTCACTGGAAGGAAAAACAAATTTCTTTGAGA 210421 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATGATA---ACAAGTGACAATAAATTTA 44609 | || ||| ||| |||||||| | | || ||| | |||| |||||| || | Sbjct 210422 AGCGGGTTTCAGAGTATCAGCGCTTTGCAGTTATGGCAGAAACAACGGACAATGTTTTCA 210481 Query 44610 CTACGGATGAAGATTTCTAAT 44630 || ||||| ||||||||||| Sbjct 210482 CTCTGGATGCAGATTTCTAAT 210502 >seq17775 Length=6148157 Score = 82.4 bits (90), Expect = 6e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 47230 AGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGACAATGCAGGAAAAAC 47289 |||||| ||| | ||||| || ||| || ||||||| || || |||||||| || ||||| Sbjct 2730529 AGGACTGTATAAGAAATCTGGTAAACTAGTATTTCTTGGATTGGACAATGCTGGGAAAAC 2730470 Query 47290 GGCATTACTCCACATGCTCAAATACAATTGCATGAAAGAGCATAACCCTACATTACATCC 47349 || | || |||||||||||| | | | || | | ||| ||||||||||||||| Sbjct 2730469 TACACTGCTGCACATGCTCAAAGATGACAGACTGGGACAACATGTCCCTACATTACATCC 2730410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396777729288115