Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq108923 109 5e-19 >seq108923 Length=1180579 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| ||||| || | || || ||||| || || ||||||||| || | ||||| | Sbjct 1013521 CGCAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 1013462 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || ||||| | || | | ||| ||||| || || | || ||||| Sbjct 1013461 TCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTG 1013402 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| ||| || | | || | ||||| ||| || |||||||| || || Sbjct 1013401 TCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCTAGGGTGATG 1013342 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||||||||| |||||||||||||| ||||| Sbjct 1013341 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 1013307 Score = 102 bits (112), Expect = 7e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 27030 AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGC 27089 || |||| ||||| || | || || ||||| || || ||||||||| || | ||||| Sbjct 1013752 AAACGCAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGC 1013693 Query 27090 TCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCT 27149 | ||||| | ||| || ||||| | || | | ||| ||||| || || | || ||| Sbjct 1013692 CCATCTTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCT 1013633 Query 27150 TTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTT 27209 || || ||| ||| || | | || | ||||| ||| || || ||||| || Sbjct 1013632 TTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTG 1013573 Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||||||||||| |||||||||||||| |||||| Sbjct 1013572 ATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATA 1013534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424209236565576