Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq89715 210 7e-49 seq108923 131 5e-25 seq62279 102 2e-16 seq77165 93.3 1e-13 seq43322 93.3 1e-13 seq114473 91.5 4e-13 >seq89715 Length=6364972 Score = 210 bits (232), Expect = 7e-49 Identities = 378/547 (69%), Gaps = 4/547 (1%) Strand=Plus/Minus Query 349760 GaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACA 349819 |||| ||| | ||||| ||||| | |||||||| ||||||||||| ||| | || || Sbjct 2944151 GAAAGGAATGTCCTTATCTTTGACCTTGGTGGTGGCACTTTTGATGTTTCAATCCTCACT 2944092 Query 349820 CTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAA 349879 |||| || || || |||||||| || ||||||| |||||||| || | ||||| || Sbjct 2944091 ATTGAGGATGGCATCTTTGAAGTAAAGTCAACTGCAGGTGATACCCACTTGGGTGGGGAG 2944032 Query 349880 GATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAAT 349938 || |||||||| ||| | || ||||| | ||||| ||||| |||| || | Sbjct 2944031 GACTTTGATAACCGTATGGTCAACCATTTCATCGCTGAATTCAAGCG-GAAGCACAAGAA 2943973 Query 349939 TGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAA 349998 |||||| || || |||||| | || || || | || || ||||||||||| || Sbjct 2943972 GGATATTACTGAGAACAAGAGAGCAGTTCGCCGTCTCCGCACAGCTTGTGAACGTGCAAA 2943913 Query 349999 GCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAA 350058 |||| || | || |||| || || || |||||| ||||| ||||| ||| |||| Sbjct 2943912 GCGTACCCTCTCCTCTAGCACTCAGGCCAGTATTGAGATTGACTCTCTCTATGAGGGCAT 2943853 Query 350059 AGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAG 350118 ||||| | | || ||||| | ||||| |||||||| ||| | ||||| || | Sbjct 2943852 TGATTTTTACACCTCAATTACCAGAGCTCGTTTTGAAGAGTTAAATGCTGATCTGTTCCG 2943793 Query 350119 AGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGAT 350178 | || ||||||||||||| || | | ||||| ||| | |||| ||||| Sbjct 2943792 TGGCACTCTGGATCCTGTGGAGAAGGCCCTGCGGGATGCCAAACTAGACAAATCACAGAT 2943733 Query 350179 TGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATC 350238 |||| | || | |||||||| || || || || || || |||| | | || Sbjct 2943732 CCATGATATTGTACTGGTTGGTGGGTCCACCCGAATCCCCAAGATTCAGAAACTGCTGCA 2943673 Query 350239 TGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCAT 350297 || || || ||||||||||| | | ||| | || ||||| ||||||||||| || | Sbjct 2943672 GGATTTCTTCAATGGCAAAGAGCTGAACAAGAGC-ATCAATCCTGATGAAGCTGTGGCTT 2943614 Query 350298 ATGGTGC 350304 ||||||| Sbjct 2943613 ATGGTGC 2943607 Score = 154 bits (170), Expect = 4e-32 Identities = 358/532 (67%), Gaps = 6/532 (1%) Strand=Plus/Plus Query 183262 CTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAAT-TCTTTGCCATT- 183319 |||||||||| || ||||||||||| || || || | | | | | ||||||||||| Sbjct 2943605 CTGCACCATAAGCCACAGCTTCATCAGGATTGAT-GCTCTTGTTCAGCTCTTTGCCATTG 2943663 Query 183320 AAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATAC 183379 || |||| ||| |||| || ||||| || || |||| || || ||||| || | ||| Sbjct 2943664 AAGAAATCCTG-CAGCAGTTTCTGAATCTTGGGGATTCGGGTGGACCCACCAACCAGTAC 2943722 Query 183380 TACTTCATCGATAT-TACTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGT 183438 | |||| ||| | | ||| ||| |||| | ||| | | || || ||||| | Sbjct 2943723 AATATCATGGATCTGTGATTTGTCTAGTTTG-GCATCCCGCAGGGCCTTCTCCACAGGAT 2943781 Query 183439 CCATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGATG 183498 ||| ||| | || | ||| | ||||||||| || | ||||| || | || | Sbjct 2943782 CCAGAGTGCCACGGAACAGATCAGCATTTAACTCTTCAAAACGAGCTCTGGTAATTGAGG 2943841 Query 183499 aaaaaaaGTCAATACCATTATATAAGGAATCAATTTCAATCGATGTTTGTGTAGATGATG 183558 |||| ||||| || | ||| | || ||||| ||||| | || || || | Sbjct 2943842 TGTAAAAATCAATGCCCTCATAGAGAGAGTCAATCTCAATACTGGCCTGAGTGCTAGAGG 2943901 Query 183559 ATAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTAT 183618 | | || | || || |||||||| ||||| | || || || | || ||| || | Sbjct 2943902 AGAGGGTACGCTTTGCACGTTCACAAGCTGTGCGGAGACGGCGAACTGCTCTCTTGTTCT 2943961 Query 183619 CTGTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTTG 183678 | |||||||| | || || || | || ||||||| || ||||| | | | | Sbjct 2943962 CAGTAATATCCTTCTTGTGCTTCCGCTTGAATTCAGCGATGAAATGGTTGACCATACGGT 2944021 Query 183679 TATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTC 183738 ||||||| || || ||||| || || ||||| || ||||| | || |||||||| || | Sbjct 2944022 TATCAAAGTCCTCCCCACCCAAGTGGGTATCACCTGCAGTTGACTTTACTTCAAAGATGC 2944081 Query 183739 CGTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 | || |||||| | | ||||| |||||||| || |||||||| | ||||| Sbjct 2944082 CATCCTCAATAGTGAGGATTGAAACATCAAAAGTGCCACCACCAAGGTCAAA 2944133 Score = 116 bits (128), Expect = 1e-20 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 ||||| ||| | || || || ||||||||||||| ||| | ||| ||| || ||| Sbjct 2945747 GGAATTGATCTTGGCACCACATATTCTTGTGTTGGTGTCTTCCAACATGGCAAGGTGGAA 2945688 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || ||||| |||||||| |||||||| || ||||| |||||||| || || || || Sbjct 2945687 ATCATTGCCAATGATCAGGGTAACAGGACCACGCCGAGTTACGTTGCCTTCACAGATACA 2945628 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 ||| | ||||||||||| ||||||| || |||| ||| ||||| | || || || Sbjct 2945627 GAGAGGCTGATTGGTGATGCTGCAAAGAACCAAGTTGCAATGAATCCTACTAACACAGTC 2945568 Query 349385 TTTG 349388 |||| Sbjct 2945567 TTTG 2945564 Score = 105 bits (116), Expect = 2e-17 Identities = 122/163 (75%), Gaps = 1/163 (1%) Strand=Plus/Minus Query 349598 ACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCA 349657 || || ||| ||||||| | || ||||||||||| || ||||| ||||||| || Sbjct 2944424 ACTGTTACTAATGCTGTGGTCACAGTACCAGCCTACTTCAATGACTCCCAGCGCCAGGCC 2944365 Query 349658 ACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACT 349717 |||||||||||||| | |||||| || | ||||| || | || || |||||||| || Sbjct 2944364 ACAAAAGATGCTGGAACCATTGCAGGTCTCAATGTGCTCCGGATCATCAATGAACCGACA 2944305 Query 349718 GCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAG 349760 ||||| || ||||| ||||| | || || | | |||| |||| Sbjct 2944304 GCTGCTGCTATTGCTTATGGTTTGGACAAGAAG-GTGAGCAAG 2944263 >seq108923 Length=1180579 Score = 131 bits (144), Expect = 5e-25 Identities = 157/212 (74%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 140527 GAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTT 140586 || |||| || || || || ||||| || || || || || || | || |||||||||| Sbjct 1013516 GACCAAG-TGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTT 1013458 Query 140587 CAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCT 140646 | || || ||||| |||||||| | | |||||||| |||||||| |||||||| || | Sbjct 1013457 CCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCTT 1013398 Query 140647 GAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCT 140706 | ||||| || || ||||| ||||| | ||| || || ||||| || || | || | Sbjct 1013397 GGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCTAGGGTGATGGTTT 1013338 Query 140707 TTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || || | ||||| ||||| ||||||||| Sbjct 1013337 TGCCCGTCAAGGTTTTCACAAAGATCTGCATT 1013306 Score = 120 bits (132), Expect = 9e-22 Identities = 154/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 140527 GAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTT 140586 || |||| || || || || ||||| || || || || || || | || |||||||||| Sbjct 1013744 GACCAAG-TGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTT 1013686 Query 140587 CAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCT 140646 | | || ||||| |||||||| | | |||||||| |||||||| |||||||| || | Sbjct 1013685 CCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCTT 1013626 Query 140647 GAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCT 140706 | ||||| || || ||||| ||||| | ||| || || || || || || | || | Sbjct 1013625 GGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTT 1013566 Query 140707 TTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || | ||||| ||||| |||||||| Sbjct 1013565 TGCCCGTCAAGGTTTTCACAAAGATCTGCAT 1013535 >seq62279 Length=12999854 Score = 102 bits (112), Expect = 2e-16 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 350107 GGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTC 350166 |||||| || | | || ||| | |||||| | ||||| || ||||| | | || Sbjct 2241438 GGATCTGTTCCGTTCCACCATGAAGCCTGTGCAGAAAGTTCTAGAAGATTCTGACCTGA- 2241496 Query 350167 CAAAAATCAGA--TTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTT 350224 | ||||| || |||| || | || | || ||||| ||||| || || || || | Sbjct 2241497 -AGAAATCCGACATTGACGAGATTGTACTTGTGGGTGGCTCTACTCGAATCCCCAAGATA 2241555 Query 350225 CAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGAT 350284 |||||| | | ||||| || ||||||||||| |||||| | || ||||||||| Sbjct 2241556 CAACAGCTTGTTAAAGAGTTCTTCAATGGCAAAGAGCCTTCTCGTGGCATCAATCCAGAT 2241615 Query 350285 GAAGCTGTTGCATATGGTGCTGCTGTTCAGGC 350316 || |||||||| |||||||| ||||||||||| Sbjct 2241616 GAGGCTGTTGCTTATGGTGCCGCTGTTCAGGC 2241647 Score = 96.9 bits (106), Expect = 1e-14 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 183250 CAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATT 183309 |||| |||||||| |||||||| |||||||| |||||||| || || |||||| | Sbjct 2241649 CAGCCTGAACAGCGGCACCATAAGCAACAGCCTCATCTGGATTGATGCCACGAGAAGGCT 2241590 Query 183310 CTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369 |||||||||| || || ||| || | ||||| || || || |||| ||| || |||| Sbjct 2241589 CTTTGCCATTGAAGAACTCTTTAACAAGCTGTTGTATCTTGGGGATTCGAGTAGAGCCAC 2241530 Query 183370 CGACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTT 183429 | || | ||| | || || || | ||| | | | ||||||| || |||||| | Sbjct 2241529 CCACAAGTACAATCTCGTCAATGTCGGATTTCTTCAGGTCAGAATCTTCTAGAACTTTCT 2241470 Query 183430 CAACAGGGTCCATAGT 183445 ||||| | ||| || Sbjct 2241469 GCACAGGCTTCATGGT 2241454 >seq77165 Length=3509557 Score = 93.3 bits (102), Expect = 1e-13 Identities = 241/366 (66%), Gaps = 1/366 (0%) Strand=Plus/Minus Query 349526 TTTTTACCC-GAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGC 349584 ||| ||||| || || ||||| | ||||| | | ||| ||||||| || ||||| | Sbjct 1655492 TTTCTACCCAGAGGAGATTTCTGCTATGGTGCTGGGTAACTTGAAGGAGATGGCTGAGGA 1655433 Query 349585 ATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGC 349644 || | || | | | || |||| || |||||||||||||| | || ||||| | Sbjct 1655432 CTACCTGGGCCATCCCATCACCCATGCCATTGTTACTGTACCAGCCCACTTCAATGACTC 1655373 Query 349645 CCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGAT 349704 |||||| || || ||||||||||| || || || | ||||| || || || | Sbjct 1655372 CCAGCGCCAGGCTACCAAAGATGCTGGGGCGATCGCTGGCCTCAATGTGCTGAGGATCCT 1655313 Query 349705 TAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaa 349764 | ||| | || || || || | || || | || || || || | |||| | Sbjct 1655312 CAGTGAGACTACAGCCGCCGCCCTCGCCTACAGCCTAGACAACCCTAGCAATGGAGAACA 1655253 Query 349765 aaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGA 349824 || | ||||| ||||| | ||||| || || || |||| || | || || |||| Sbjct 1655252 CAACGTGCTTATCTTTGACCTGGGTGGAGGAACCTTCAATGTCTCTGTCCTCACCATTGA 1655193 Query 349825 AGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTT 349884 | ||| || | || || || || || |||| || || ||||| || || || ||||| Sbjct 1655192 CGGGGGCATCCTCGAGGTGAAGGCCACCTCTGGGGACACCCATCTGGGAGGGGATGATTT 1655133 Query 349885 TGATAA 349890 ||| || Sbjct 1655132 TGACAA 1655127 >seq43322 Length=7816820 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 130661 CATACCATAGAACACTTTATAATTTTCACCATTTTCTTCAACAACTTCCCCAGCACATTC 130720 ||| || ||||||| ||| || | ||||||| ||| | ||| || |||||||||| Sbjct 3807027 CATCCCGTAGAACAGTTTCATCTTCTTGCCATTTTTTTCTAGAACCTCTCCAGCACATTG 3807086 Query 130721 ATCATGTGCAGCTAACATTCCTCCAAGCATAACAAAATCAGCTCCTGCTCC 130771 ||| || | || ||||||||||||||||| ||||||||||| || ||||| Sbjct 3807087 ATCGTGGCCTGCAAACATTCCTCCAAGCATGACAAAATCAGCACCAGCTCC 3807137 >seq114473 Length=2321378 Score = 91.5 bits (100), Expect = 4e-13 Identities = 81/100 (81%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 140537 AAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTT 140596 |||| || || | ||||||||||| || ||||| | || || |||||||| | || || Sbjct 608926 AAGA-TACACACCTTTTGAATATTGTAGTCAGACAGCGTGCGTCCATCTTCCAACTGCTT 608868 Query 140597 TCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCT 140636 |||||||| || || |||||||||||||||||||||||| Sbjct 608867 GCCAGCAAAAATAAGTCGTTGCTGATCAGGAGGAATTCCT 608828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1512535965893469