Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq94266 93.3 5e-14 seq78831 87.8 2e-12 >seq94266 Length=584714 Score = 93.3 bits (102), Expect = 5e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 79080 CTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCC 79139 |||||| ||| | | ||| | |||||||||||||| || |||||||||| || Sbjct 87689 CTCGTCTTTGCTGGTATACTCCACGATTTCTGTGCACAGGTTGCTGCACTTGATGGTTCC 87748 Query 79140 GATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCC 79199 | ||||| ||||||||||||| ||||| | ||||||||| |||||| || ||||| Sbjct 87749 CAGGTTCTGCTGGTTGCTCTTCCTATTACAAGAGTCCTTGTACAGCATGTAAGGGGTCCC 87808 Query 79200 GGTCTC 79205 |||||| Sbjct 87809 GGTCTC 87814 >seq78831 Length=713705 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 || ||||| ||||||||| ||||||||||| || || || |||||| || ||||| Sbjct 196922 GCCTTTGCTGCCGTGGAAGGGATCTTCTTCTCAGGTTCTTTTGCTGCTATATTTTGGCTG 196981 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||| | || || ||||| || |||| |||||||| ||||| ||| ||| || ||| Sbjct 196982 AAGAAGAGGGGTCTGATGCCTGGACTGACATTCTCCAATGAGCTCATTAGCCGAGATGAG 197041 Query 60111 G 60111 | Sbjct 197042 G 197042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547564723899120