Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq65389 100 3e-16 seq98928 91.5 2e-13 seq10001 86.0 7e-12 >seq65389 Length=9622385 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| | || || ||||| ||||| || || ||||| Sbjct 9074040 GTGAAGATGTATCGAGGGCTGGCAGAGTCTTTTCCACCATGCAGCCTGGTACCGAACTGA 9074099 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| || ||||||||||| ||| ||||| ||||||||||||||||| | | Sbjct 9074100 CCAATGGGCTGTAGCAGGTTGAGGTTATTGCTTCCCACAAAATTCTGAGCCAAATTAATA 9074159 Query 152149 ATCGT 152153 || || Sbjct 9074160 ATGGT 9074164 >seq98928 Length=4821939 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| ||| ||||||||||| || ||| ||| | ||||| || || Sbjct 3293210 GTGAAAATATAACGAGGGCTGGCAGCATCCTTCCCGCCATGAAGCCTGGTACCAAACTGA 3293151 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | |||| || || || | ||||| || |||||||| ||||||||||||||| Sbjct 3293150 CCGATAGGCTGCAGCAGATTAACATTGTTACTTCCAACAAAGTTCTGAGCCAAGTTGACA 3293091 Query 117425 ATCGT 117429 || || Sbjct 3293090 ATAGT 3293086 >seq10001 Length=4979691 Score = 86.0 bits (94), Expect = 7e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | ||| || ||||| | || |||||||| | || | ||||||| Sbjct 1096741 TCATCTCTGCTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCTTC 1096800 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 ||||||||||||| ||||| ||| ||||||||| ||||| || ||||| || Sbjct 1096801 AACCAAAAGATGGATGCAAAGGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAAAGCT 1096860 Query 74892 ACAAGGCGTT 74901 || | |||| Sbjct 1096861 ACTACACGTT 1096870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546258214675400