Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq57837 111 2e-19 >seq57837 Length=2024552 Score = 111 bits (122), Expect = 2e-19 Identities = 113/145 (78%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 32960 GATGCAGTTTCATTTAGCAATAGGTCATACAGCAATGTCTATATATATAGATTGTCCGTT 33019 ||| ||||| ||| | | | || || ||||| |||||||| ||||| || ||||| || Sbjct 1234351 GATTCAGTTCCATGTGACTCTTGGCCACACAGCCATGTCTATTTATATCGACTGTCCCTT 1234292 Query 33020 CCCTAGATGGATACAGTGGGCTGTTATTATATATTCTATCACCTTTATCATCCTTTTTGG 33079 ||||| |||||| || |||| ||| || || ||| ||||||||||||| || | ||||| Sbjct 1234291 CCCTAAATGGATGCACTGGGGTGTAATGATCTATGCTATCACCTTTATTTTCTTGTTTGG 1234232 Query 33080 CAACTTTTA-TCTCAGGACATATAA 33103 ||||| || | || |||||||||| Sbjct 1234231 TAACTTCTACTATC-GGACATATAA 1234208 Score = 104 bits (114), Expect = 3e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 32661 ATAGCCAGAGCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATT 32720 ||||| | || || |||| || ||| |||| ||||| || || || | || || || Sbjct 1240388 ATAGCTGGTGCTTTATGGTGGTACTTTGTCTCAAAAGGAATTGAGTACTTGGACACAATA 1240329 Query 32721 TTCTTCATAATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTT 32780 || ||||| |||| ||||||||||||||| | || || | || || || |||||||| Sbjct 1240328 TTTTTCATCCTGAGGAAGAAATTTAACCAAATCAGTTTCCTTCATGTCTATCACCATTTC 1240269 Query 32781 ACCATGTTTACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACA 32830 || ||||| || || | ||||| || || || ||| || |||||||||| Sbjct 1240268 ACTATGTTCACCTTGTGGTGGATTGGTATCAAGTGGGTTCCAGGAGGACA 1240219 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 32832 GCATTTTTTGGAGCACAGATAAATTCTTTTATACATGTTATAATGTATAGTTATTACGGA 32891 || ||||||||||| || || ||||||||||| |||||| | ||||| | || || ||| Sbjct 1236594 GCTTTTTTTGGAGCCCAAATGAATTCTTTTATTCATGTTGTTATGTACATGTACTATGGA 1236535 Query 32892 TTAACAGCAATAGGTCCTTCCTTGCGAAAATATCTATGGTGGAAAAAATATTTAACTATC 32951 ||| | || || ||| || | |||||||| ||||||||| ||| || || || Sbjct 1236534 TTAGCTGCCTGTGGCCCTAAATTTCAGAAATATCTTTGGTGGAAACGATACTTGACCATA 1236475 Query 32952 ATACAATTG 32960 |||||||| Sbjct 1236474 TTACAATTG 1236466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602125060185520