Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18]
140,023 sequences; 2,208,410,377 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq108923 134 1e-26
seq51508 118 9e-22
>seq108923
Length=1180579
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| ||||| |||| ||||| | || || || || ||||| ||
Sbjct 1013535 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAGGTGGAGCCCAGT 1013594
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||||| ||||| ||||| ||||||||||||||||| || || |||||
Sbjct 1013595 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAG 1013654
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | || || | ||||| || || |||||||| | ||| | ||||| ||||||
Sbjct 1013655 CAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGGCGCACCCTGTCCGACTACAAC 1013714
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|| || || || || ||| | || ||||| ||||||| |||| ||
Sbjct 1013715 ATCCAGAAAGAATCCACCCTGCACTTGGTCCTGCGTTTAAGGGGCGG 1013761
Score = 131 bits (144), Expect = 1e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| ||||| |||| ||||| | || || || |||||||| ||
Sbjct 1013307 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTGGAGCCCAGT 1013366
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||||| ||||| ||||| ||||||||||||||||| || || |||||
Sbjct 1013367 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAG 1013426
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | || || | ||||| || || ||||||| | ||| | ||||| ||||||
Sbjct 1013427 CAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 1013486
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || || || || ||| | || ||||| |||| || | ||||| ||
Sbjct 1013487 ATCCAGAAAGAATCCACCCTGCACTTGGTCCTGCGCCTGAGAGGTGGTAT 1013536
>seq51508
Length=10579796
Score = 118 bits (130), Expect = 9e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || || |||||||||||| | || || || || || || ||
Sbjct 7030013 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTTGAGCCCAGT 7029954
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||||| ||||| || || || |||||||||||||| ||||| || ||
Sbjct 7029953 GACACTATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATCCCACCTGACCAG 7029894
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | | || | || ||||| || ||||||| | ||| | || || ||||||
Sbjct 7029893 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 7029834
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215
|| || ||||| || || | ||| | || ||||| || ||||||||
Sbjct 7029833 ATCCAGAAGGAATCCACTCTCCATCTTGTGCTGCGTCTGAGGGGTGGC 7029786
Score = 118 bits (130), Expect = 9e-22
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || || |||||||||||| | || || || || || || ||
Sbjct 7030241 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTTGAGCCCAGT 7030182
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||||| ||||| || || || |||||||||||||| ||||| || ||
Sbjct 7030181 GACACTATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATCCCACCTGACCAG 7030122
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | | || | || ||||| || ||||||| | ||| | || || ||||||
Sbjct 7030121 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 7030062
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || ||||| || ||| | ||| | || ||||| || | ||||| ||
Sbjct 7030061 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGGTAT 7030012
Score = 111 bits (122), Expect = 1e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| ||||| || || |||| |||||| | || || || || || || ||
Sbjct 7030470 CATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTAGAGGTTGAGCCCAG 7030411
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | ||||||| ||||| || || || |||||||||||||| ||||| || ||
Sbjct 7030410 TGACACTATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATCCCACCTGACCA 7030351
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||| | | || | || ||||| || ||||||| | ||| | || || |||||
Sbjct 7030350 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAA 7030291
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| || ||||| || ||| | ||| | || ||||| || | ||||| ||
Sbjct 7030290 CATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGGTAT 7030240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434157167760960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |