Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq54508 113 4e-20 seq76943 100 2e-16 >seq54508 Length=4660635 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||| ||||||||||||||||||||||| | || || || |||||||| Sbjct 787376 GTGGTGGAGGAGCTGTTCCGAGATGGGGTAAACTGGGGAAGGATCGTGGCCTTCTTTGAA 787317 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||| ||||| ||||||||| | | || | | || || |||| | Sbjct 787316 TTCGGTGGCGTGATGTGCGTGGAGAGCGTCAATCGGGAGATGTCGCCTCTTGTGGACAGC 787257 Query 3365 ATTGCCGCGTGGATGACAGA 3384 ||||| | ||||||||| || Sbjct 787256 ATTGCTGTGTGGATGACCGA 787237 >seq76943 Length=1194919 Score = 100 bits (110), Expect = 2e-16 Identities = 121/163 (74%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTG--TAGCTGGCTACATTAAAAG 118591 || ||||| | || |||||||| || || | || || || ||||| | ||| |||| Sbjct 632466 AGGCCTGTGACATGGGCAATCATATACGTGAG--AAGTGAATAACTGGCAATATTGAAAG 632523 Query 118592 GAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTG 118651 | || || || ||||||||| | |||||||| ||||| |||||||| || || || ||| Sbjct 632524 GCACCCCGAGTCCCATGTCTCCAGATCTCTGATACAACTGGCAAGACAGTTCACCATTTA 632583 Query 118652 CAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 |||||||||||| | | ||| |||||||||| | |||| Sbjct 632584 GAACATAAAACTGGCACAGAGCGTGGCATGGAGGCAAAGCCAT 632626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413769482776972