Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq108923 98.7 7e-16 >seq108923 Length=1180579 Score = 98.7 bits (108), Expect = 7e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| |||| || ||||| |||| || ||||||||||| || ||||| Sbjct 1013628 GACAAAGAAGGCATTCCTCCAGATCAGCAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAA 1013687 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| | ||||||| ||||||||||| ||||| ||| |||| ||||| || Sbjct 1013688 GATGGGCGCACCCTGTCCGACTACAACATCCAGAAAGAATCCACCCTGCACTTGGTCCTG 1013747 Query 28003 CGTTTGCGTGGCGG 28016 ||||| | ||||| Sbjct 1013748 CGTTTAAGGGGCGG 1013761 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 |||||||| || ||||||||||| | || || ||| || || | || || || | Sbjct 1013304 AAAATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTGGAGCCC 1013363 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| || | ||| ||||| ||||| ||||||||||| |||| | Sbjct 1013364 AGTGACACCATTGAGAAT--GTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAG 1013421 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| |||| || ||||||||||| || |||| || | |||| | ||||||| | Sbjct 1013422 ATCAGCAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACT 1013481 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 |||||||||| ||||| ||| |||| ||||| |||| Sbjct 1013482 ACAACATCCAGAAAGAATCCACCCTGCACTTGGTCCTGCG 1013521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355255110027321