Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq51508 161 2e-34 seq108923 132 1e-25 >seq51508 Length=10579796 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || |||||||| || || |||||||| || || | ||||| | |||||| Sbjct 7029802 AGCACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCT 7029861 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || |||||||| || | ||||| |||||| Sbjct 7029862 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCC 7029921 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || || |||||| | |||||||| || ||||| ||| Sbjct 7029922 TGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATGGTC 7029981 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 7029982 TTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 7030013 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || ||||| || || |||||||| || || | ||||| | |||||| Sbjct 7030030 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCT 7030089 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || |||||||| || | ||||| |||||| Sbjct 7030090 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCC 7030149 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || || |||||| | |||||||| || ||||| ||| Sbjct 7030150 TGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATGGTC 7030209 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 7030210 TTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 7030241 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || ||||| || || |||||||| || || | ||||| | |||||| Sbjct 7030258 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCT 7030317 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || |||||||| || | ||||| |||||| Sbjct 7030318 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCC 7030377 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || || |||||| | |||||||| || ||||| ||| Sbjct 7030378 TGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATGGTC 7030437 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || | ||||| ||||| | |||||| || Sbjct 7030438 TTGCCAGTCAAGGTCTTCACAAAGATCTGCATGTT 7030472 >seq108923 Length=1180579 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || ||||| ||||| |||||||| || || | ||||| | |||||| Sbjct 1013518 AGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 1013459 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| | | || || || ||||||| ||||| ||||| Sbjct 1013458 TCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCT 1013399 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || || || || ||||||||| | || || || || ||||| || Sbjct 1013398 TGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCTAGGGTGATGGTT 1013339 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATG 211120 || ||||| | || || ||||| | ||||||||| || Sbjct 1013338 TTGCCCGTCAAGGTTTTCACAAAGATCTGCATTTTCTG 1013301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1157072429512395