Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq108923 147 5e-30 seq51508 123 6e-23 seq140023 120 7e-22 >seq108923 Length=1180579 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| | ||| || ||||||||||| |||| ||||| |||| || || | |||||| Sbjct 1013519 CAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 1013460 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| | | || || || || ||||| ||||| ||||| Sbjct 1013459 TTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTC 1013400 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||| || ||| ||| || |||||||| || ||||| |||| ||||| || Sbjct 1013399 TTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCTAGGGTGATGGT 1013340 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATG 225719 ||||||||||| ||||| | || | |||||||| || Sbjct 1013339 TTTGCCCGTCAAGGTTTTCACAAAGATCTGCATTTTCTG 1013301 Score = 136 bits (150), Expect = 9e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| | ||| || ||||||||||| |||| ||||| |||| || || | |||||| Sbjct 1013747 CAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 1013688 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| | |||||| || || ||||| | | || || || || ||||| ||||| ||||| Sbjct 1013687 TTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTC 1013628 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||| || ||| ||| || |||||||| || ||||| |||| ||||| || Sbjct 1013627 TTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGT 1013568 Query 225681 CTTGCCCGTCAAAGTTTT 225698 ||||||||||| ||||| Sbjct 1013567 TTTGCCCGTCAAGGTTTT 1013550 >seq51508 Length=10579796 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| |||||||||||||| || |||| ||||| || | || || | ||||| Sbjct 7029801 CAGCACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATC 7029860 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || ||||| || || || ||||| ||||| Sbjct 7029861 TTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTC 7029920 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| || || ||||| || || || |||| ||||| || Sbjct 7029921 CTGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATGGT 7029980 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 7029981 CTTGCCGGTCA 7029991 >seq140023 Length=16497 Score = 120 bits (132), Expect = 7e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| | || || || || |||| || ||||||||| |||| || ||||| | ||||| Sbjct 5553 CCAAATCTATAATGTCATCGTTACAGCTCATGCCTTTATTATAATCTTCTTCATAGTTAT 5612 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || |||| || || || |||||||||||| | ||||| |||| |||||||| || || Sbjct 5613 ACCAATTATAATTGGTGGCTTCGGAAATTGACTTGTTCCCCTAATAATTGGTGCACCAGA 5672 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTC 7721 || || |||||| | | || || ||||| |||||| | ||||| ||||| Sbjct 5673 CATAGCATTTCCACGTATAAATAACATAAGCTTTTGACTCCTACCCCCTTC 5723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1190391745735962